miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
689 5' -55.1 AC_000018.1 + 17353 0.66 0.617303
Target:  5'- gCGACUugcagGUGGUuugCGGCGGCgagaGGUGUUGCu -3'
miRNA:   3'- -GCUGG-----CAUCG---GUCGCUGa---CUACGACG- -5'
689 5' -55.1 AC_000018.1 + 22682 0.66 0.605935
Target:  5'- cCGACCa-AGCCAG-GA-UGAUGCUGa -3'
miRNA:   3'- -GCUGGcaUCGGUCgCUgACUACGACg -5'
689 5' -55.1 AC_000018.1 + 4472 0.66 0.605935
Target:  5'- gGGCCGUGGgCAGCGGCacggGCg-- -3'
miRNA:   3'- gCUGGCAUCgGUCGCUGacuaCGacg -5'
689 5' -55.1 AC_000018.1 + 10418 0.66 0.594591
Target:  5'- uCGucuCCGUGGCCuggaggcuaAGCGAacgGGUuggGCUGCg -3'
miRNA:   3'- -GCu--GGCAUCGG---------UCGCUga-CUA---CGACG- -5'
689 5' -55.1 AC_000018.1 + 13613 0.67 0.527561
Target:  5'- -cGCUGU--CCGGaaCGGCUGGUGCUGCc -3'
miRNA:   3'- gcUGGCAucGGUC--GCUGACUACGACG- -5'
689 5' -55.1 AC_000018.1 + 15574 0.67 0.51664
Target:  5'- aCGugCGUgAGCgaAGUGGCUGucggaGCUGCu -3'
miRNA:   3'- -GCugGCA-UCGg-UCGCUGACua---CGACG- -5'
689 5' -55.1 AC_000018.1 + 11469 0.68 0.457359
Target:  5'- aGACCGUGGCgCAgcucGCGACccgcguuaaaucgaGAUGCUcGCa -3'
miRNA:   3'- gCUGGCAUCG-GU----CGCUGa-------------CUACGA-CG- -5'
689 5' -55.1 AC_000018.1 + 16280 0.68 0.452241
Target:  5'- -cGCCGUGGCCGcgcgccuGCGGgacCUGccGCUGCu -3'
miRNA:   3'- gcUGGCAUCGGU-------CGCU---GACuaCGACG- -5'
689 5' -55.1 AC_000018.1 + 23624 0.69 0.413439
Target:  5'- gGGCagagGUGGa-GGCGACUGAgauggGCUGCg -3'
miRNA:   3'- gCUGg---CAUCggUCGCUGACUa----CGACG- -5'
689 5' -55.1 AC_000018.1 + 12953 0.7 0.373122
Target:  5'- gCGACCGUGuCUAGCuuGCUGAucccaacucccgccUGCUGCu -3'
miRNA:   3'- -GCUGGCAUcGGUCGc-UGACU--------------ACGACG- -5'
689 5' -55.1 AC_000018.1 + 3720 0.73 0.236641
Target:  5'- gCGGCagcaGUAGCggCGGCGGCUGcaGCUGCa -3'
miRNA:   3'- -GCUGg---CAUCG--GUCGCUGACuaCGACG- -5'
689 5' -55.1 AC_000018.1 + 18820 1.13 0.000307
Target:  5'- cCGACCGUAGCCAGCGACUGAUGCUGCg -3'
miRNA:   3'- -GCUGGCAUCGGUCGCUGACUACGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.