miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
710 5' -52.1 AC_000019.1 + 24158 0.66 0.752959
Target:  5'- gAGACUCGgGcCGCAAauGCUCUGCaaaAGg -3'
miRNA:   3'- gUUUGAGCgC-GUGUU--UGAGGCGg--UCg -5'
710 5' -52.1 AC_000019.1 + 30257 0.68 0.650322
Target:  5'- -cGACUUGCcCAacuacGCaUCCGCCAGCa -3'
miRNA:   3'- guUUGAGCGcGUguu--UG-AGGCGGUCG- -5'
710 5' -52.1 AC_000019.1 + 32951 0.71 0.427018
Target:  5'- aCAAGgUUGCGCGCAcGCUCgacaucaugCGCCAGa -3'
miRNA:   3'- -GUUUgAGCGCGUGUuUGAG---------GCGGUCg -5'
710 5' -52.1 AC_000019.1 + 15078 0.75 0.269852
Target:  5'- aCAAGCU-GUGUACucccagcAGCUCCGCCAGUc -3'
miRNA:   3'- -GUUUGAgCGCGUGu------UUGAGGCGGUCG- -5'
710 5' -52.1 AC_000019.1 + 16193 1.11 0.000805
Target:  5'- gCAAACUCGCGCACAAACUCCGCCAGCc -3'
miRNA:   3'- -GUUUGAGCGCGUGUUUGAGGCGGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.