miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
718 5' -58.1 AC_000019.1 + 9253 0.66 0.433927
Target:  5'- aGGCGggGGCGgAggggGCaCGcggcGACGUCGa -3'
miRNA:   3'- gCCGCuuCCGCgUaa--CG-GU----CUGCGGU- -5'
718 5' -58.1 AC_000019.1 + 3272 0.66 0.395623
Target:  5'- -uGCGGAGGCaaGCA-UGCCAGGuuccaGCCGg -3'
miRNA:   3'- gcCGCUUCCG--CGUaACGGUCUg----CGGU- -5'
718 5' -58.1 AC_000019.1 + 9331 0.66 0.386393
Target:  5'- gCGGCGgcGGCGCAUgGUUucaguGACGgCGc -3'
miRNA:   3'- -GCCGCuuCCGCGUAaCGGu----CUGCgGU- -5'
718 5' -58.1 AC_000019.1 + 33030 0.66 0.386393
Target:  5'- aGGCGAAGaagaGUGUGUucUGCCAGG-GCCGc -3'
miRNA:   3'- gCCGCUUC----CGCGUA--ACGGUCUgCGGU- -5'
718 5' -58.1 AC_000019.1 + 15751 0.67 0.334075
Target:  5'- gGGCGAAGaGC-CAUgcuuagggcgGCCAGACGUg- -3'
miRNA:   3'- gCCGCUUC-CGcGUAa---------CGGUCUGCGgu -5'
718 5' -58.1 AC_000019.1 + 8438 0.68 0.317827
Target:  5'- gCGGUGAcgGGGaCGCGc-GCCGGGCGgCAg -3'
miRNA:   3'- -GCCGCU--UCC-GCGUaaCGGUCUGCgGU- -5'
718 5' -58.1 AC_000019.1 + 10861 0.81 0.034653
Target:  5'- gGGCGAAGGCGCAccuagagUGCCAGuccuuCGCCc -3'
miRNA:   3'- gCCGCUUCCGCGUa------ACGGUCu----GCGGu -5'
718 5' -58.1 AC_000019.1 + 15666 1.08 0.0003
Target:  5'- cCGGCGAAGGCGCAUUGCCAGACGCCAc -3'
miRNA:   3'- -GCCGCUUCCGCGUAACGGUCUGCGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.