miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7445 5' -59.8 NC_001902.1 + 25668 0.69 0.1788
Target:  5'- gGGGGUUuuggauuuuuACCCUGACCCcugcgUggUCCCUg -3'
miRNA:   3'- gUCCCAG----------UGGGACUGGG-----AuuGGGGGa -5'
7445 5' -59.8 NC_001902.1 + 8884 0.69 0.159845
Target:  5'- gCAGuaa-ACCCUGAUgCUGACCCCCa -3'
miRNA:   3'- -GUCccagUGGGACUGgGAUUGGGGGa -5'
7445 5' -59.8 NC_001902.1 + 18303 0.71 0.121562
Target:  5'- --aGGUCACCCUGcaaugcgugGCCCUccccaagcccgggaaGACCCCCc -3'
miRNA:   3'- gucCCAGUGGGAC---------UGGGA---------------UUGGGGGa -5'
7445 5' -59.8 NC_001902.1 + 26033 0.72 0.095235
Target:  5'- uUAGGGUCAgggUGACCCUGuCCCCCa -3'
miRNA:   3'- -GUCCCAGUgggACUGGGAUuGGGGGa -5'
7445 5' -59.8 NC_001902.1 + 25987 1.07 0.000182
Target:  5'- aCAGGGUCACCCUGACCCUAACCCCCUc -3'
miRNA:   3'- -GUCCCAGUGGGACUGGGAUUGGGGGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.