Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7634 | 3' | -53.7 | NC_001973.1 | + | 160571 | 1.07 | 0.007208 |
Target: 5'- gCGUCGGCUAGGGUCGAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGAUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 16545 | 1.07 | 0.007208 |
Target: 5'- gCGUCGGCUAGGGUCGAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGAUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 130902 | 1.07 | 0.007208 |
Target: 5'- gCGUCGGCUAGGGUCGAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGAUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 16389 | 1.07 | 0.007208 |
Target: 5'- gCGUCGGCUAGGGUCGAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGAUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 12454 | 0.98 | 0.025362 |
Target: 5'- gCGUCGGCcGGGGUCGAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 130569 | 0.98 | 0.025362 |
Target: 5'- gCGUCGGCcGGGGUCGAUCGAGUUCAAa -3' miRNA: 3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 130804 | 0.98 | 0.027567 |
Target: 5'- gCGUCGGCcGGGGUCGAUCGAGUUCGAg -3' miRNA: 3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 2829 | 0.97 | 0.032558 |
Target: 5'- gCGUCGGCcGGGGUCGAUCGGGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 21188 | 0.97 | 0.032558 |
Target: 5'- gCGUCGGCcGGGGUCGAUCGGGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 2711 | 0.97 | 0.032558 |
Target: 5'- gCGUCGGCcGGGGUCGAUCGGGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 20991 | 0.96 | 0.037388 |
Target: 5'- gCGUCGGCUAGGGUCaAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGAUCCCAGcUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 12217 | 0.89 | 0.097067 |
Target: 5'- aCGUgcCGGCcAGGGUCGAUCGAGUUCAAg -3' miRNA: 3'- -GCA--GCCGaUCCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 12376 | 0.87 | 0.126564 |
Target: 5'- gCGUCGGCaAGGGUCaAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 21090 | 0.87 | 0.126564 |
Target: 5'- gCGUCGGCcGGGGUCaAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 71968 | 0.87 | 0.126564 |
Target: 5'- gCGUCGGCgAGGGUCaAUCGAGUUCAAa -3' miRNA: 3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 72055 | 0.87 | 0.126564 |
Target: 5'- gCGUCGGCgAGGGUCaAUCGAGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 72150 | 0.86 | 0.140544 |
Target: 5'- gCGUCGGCaaaGGUCGAUCGAGUUCAAa -3' miRNA: 3'- -GCAGCCGaucCCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 160415 | 0.85 | 0.168446 |
Target: 5'- gCGUCGGCcGGuGUCGAUCGAGUUCAAa -3' miRNA: 3'- -GCAGCCGaUCcCAGCUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 129255 | 0.84 | 0.186536 |
Target: 5'- gCGUCGGCaAGGGUC-AUCGGGUUCAAg -3' miRNA: 3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5' |
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7634 | 3' | -53.7 | NC_001973.1 | + | 160650 | 0.84 | 0.186536 |
Target: 5'- gCGUCGGCUAGGGUCaacaGAGUUCAAg -3' miRNA: 3'- -GCAGCCGAUCCCAGcuagCUCAAGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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