miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 28408 0.66 0.749979
Target:  5'- cGCCgucAGUgagCGcGCUUGGCGGcCGCGg -3'
miRNA:   3'- -CGGgu-UCGa--GCuCGAGCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 48043 0.66 0.749979
Target:  5'- uCUCAAGUuaaaaUCGGGCaguucagauUCGGCgaGGACGCGu -3'
miRNA:   3'- cGGGUUCG-----AGCUCG---------AGCCG--CCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 107314 0.66 0.740641
Target:  5'- gGCCCGAuGCUgGcGCgccuggaaGGCGGAgCGCGc -3'
miRNA:   3'- -CGGGUU-CGAgCuCGag------CCGCCU-GCGC- -5'
7635 3' -60.1 NC_001973.1 + 47789 0.66 0.740641
Target:  5'- gGUCCAGGC-CGGccgcGC-CGGCcGACGCGu -3'
miRNA:   3'- -CGGGUUCGaGCU----CGaGCCGcCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 74178 0.66 0.739702
Target:  5'- uGCCCGccgucgaagacgcGGUUgaugcaagucaCGAGCUCGGCgucGGAgGCGu -3'
miRNA:   3'- -CGGGU-------------UCGA-----------GCUCGAGCCG---CCUgCGC- -5'
7635 3' -60.1 NC_001973.1 + 96759 0.67 0.731214
Target:  5'- cGCCggCGAG-UCGGGCggcgUGGCGGccaACGCGg -3'
miRNA:   3'- -CGG--GUUCgAGCUCGa---GCCGCC---UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16967 0.67 0.721708
Target:  5'- uGCCCGAGUUUuuGGUcgUGGCGGcCGCGc -3'
miRNA:   3'- -CGGGUUCGAGc-UCGa-GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 4837 0.67 0.721708
Target:  5'- cGCCaCGAccGCUUaaAG-UCGGCGGGCGCGa -3'
miRNA:   3'- -CGG-GUU--CGAGc-UCgAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 85326 0.67 0.721708
Target:  5'- gGCUCAcGUUCGAGgUCGGCucuucgagcccGACGCGc -3'
miRNA:   3'- -CGGGUuCGAGCUCgAGCCGc----------CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 124494 0.67 0.721708
Target:  5'- cGCCCGcGCUCu-GC-CGGCGcuggccGACGCGu -3'
miRNA:   3'- -CGGGUuCGAGcuCGaGCCGC------CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 40040 0.67 0.721708
Target:  5'- aGCCUGAGCUCGguguacAGCUCG-CGcACGCc -3'
miRNA:   3'- -CGGGUUCGAGC------UCGAGCcGCcUGCGc -5'
7635 3' -60.1 NC_001973.1 + 40176 0.67 0.715969
Target:  5'- gGCCCGAGCUgaucugcacgaCGGGCacgucuccgaacaGGUGcGACGCGa -3'
miRNA:   3'- -CGGGUUCGA-----------GCUCGag-----------CCGC-CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 139888 0.67 0.71213
Target:  5'- --gCAAGCUCGAGCgcguggugUCGGUGcuGCGCGc -3'
miRNA:   3'- cggGUUCGAGCUCG--------AGCCGCc-UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 136592 0.67 0.71213
Target:  5'- gGCgCGAcGCUC-AGCUCGuCGGGCGCc -3'
miRNA:   3'- -CGgGUU-CGAGcUCGAGCcGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 51561 0.67 0.711169
Target:  5'- cGCCCGGGCuauuuaaUCGAGC----CGGGCGCGc -3'
miRNA:   3'- -CGGGUUCG-------AGCUCGagccGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 76994 0.67 0.702489
Target:  5'- gGCgCCAcGCugaucaccucgUCGGGCggCGGCGGcGCGCGc -3'
miRNA:   3'- -CG-GGUuCG-----------AGCUCGa-GCCGCC-UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 86855 0.67 0.692793
Target:  5'- gGCCCAGuGCUCGcGCUgCGGCauGGucguCGUGa -3'
miRNA:   3'- -CGGGUU-CGAGCuCGA-GCCG--CCu---GCGC- -5'
7635 3' -60.1 NC_001973.1 + 44592 0.67 0.691821
Target:  5'- aGCCCGcggcggcGGCgagCGGGCUCGGCccGAC-CGg -3'
miRNA:   3'- -CGGGU-------UCGa--GCUCGAGCCGc-CUGcGC- -5'
7635 3' -60.1 NC_001973.1 + 124413 0.67 0.68305
Target:  5'- cCCCGAGgaguucCUCGcGCUgcacaaggaGGCGGACGCGc -3'
miRNA:   3'- cGGGUUC------GAGCuCGAg--------CCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 152378 0.67 0.68305
Target:  5'- aGCCgGacGGC-CGGcGCg-GGCGGGCGCGg -3'
miRNA:   3'- -CGGgU--UCGaGCU-CGagCCGCCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.