miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 16493 0.97 0.009858
Target:  5'- aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUU--------------CGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16967 0.67 0.721708
Target:  5'- uGCCCGAGUUUuuGGUcgUGGCGGcCGCGc -3'
miRNA:   3'- -CGGGUUCGAGc-UCGa-GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 17243 0.66 0.777385
Target:  5'- aGCCCAuauaaauguaCUCG-GCcgCGGCGGcCGCGc -3'
miRNA:   3'- -CGGGUuc--------GAGCuCGa-GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 20947 0.8 0.135675
Target:  5'- aGCCgGcGCgguaaacUGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGgUuCGa------GCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 21052 1.08 0.001701
Target:  5'- uGCCCGAGCUCGAGCUCGGCGGGCGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 21152 0.9 0.028764
Target:  5'- -gCUucGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cgGGuuCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 23563 0.69 0.584719
Target:  5'- -aCCGcAGC-CG-GC-CGGCGGACGCGc -3'
miRNA:   3'- cgGGU-UCGaGCuCGaGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 23848 0.72 0.425436
Target:  5'- aGCCCGAGCUgugCGAGCUgcugucccgcaaGGCGGucaauCGCGc -3'
miRNA:   3'- -CGGGUUCGA---GCUCGAg-----------CCGCCu----GCGC- -5'
7635 3' -60.1 NC_001973.1 + 27845 0.68 0.653619
Target:  5'- gGCCCGguuGGC-CGGcGCU-GGCGGcCGCGg -3'
miRNA:   3'- -CGGGU---UCGaGCU-CGAgCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 28408 0.66 0.749979
Target:  5'- cGCCgucAGUgagCGcGCUUGGCGGcCGCGg -3'
miRNA:   3'- -CGGgu-UCGa--GCuCGAGCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 29951 0.71 0.498623
Target:  5'- cGCCuCGAGCcCGuacagagacgccGGCUCGGUgguGGGCGCGu -3'
miRNA:   3'- -CGG-GUUCGaGC------------UCGAGCCG---CCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 30349 0.69 0.594518
Target:  5'- cGCgCAGGC-CGAGUUCGGgccgcCGG-CGCGg -3'
miRNA:   3'- -CGgGUUCGaGCUCGAGCC-----GCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 31028 0.72 0.415266
Target:  5'- cGCUCAugaucuGCUCGAGCgucugaacgccgaCGGCGGGCaGCGu -3'
miRNA:   3'- -CGGGUu-----CGAGCUCGa------------GCCGCCUG-CGC- -5'
7635 3' -60.1 NC_001973.1 + 32077 0.68 0.663456
Target:  5'- aGCCCAg---CGAGaa-GGUGGGCGCGg -3'
miRNA:   3'- -CGGGUucgaGCUCgagCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 32533 0.76 0.253796
Target:  5'- aGUCCAAGUucgCGAGCUCGGCGaucgccgccgccGACGCc -3'
miRNA:   3'- -CGGGUUCGa--GCUCGAGCCGC------------CUGCGc -5'
7635 3' -60.1 NC_001973.1 + 39457 0.66 0.777385
Target:  5'- uGCCCA-GCUCGAcGUaUCGGU--GCGCGu -3'
miRNA:   3'- -CGGGUuCGAGCU-CG-AGCCGccUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 40040 0.67 0.721708
Target:  5'- aGCCUGAGCUCGguguacAGCUCG-CGcACGCc -3'
miRNA:   3'- -CGGGUUCGAGC------UCGAGCcGCcUGCGc -5'
7635 3' -60.1 NC_001973.1 + 40176 0.67 0.715969
Target:  5'- gGCCCGAGCUgaucugcacgaCGGGCacgucuccgaacaGGUGcGACGCGa -3'
miRNA:   3'- -CGGGUUCGA-----------GCUCGag-----------CCGC-CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 41111 0.73 0.372976
Target:  5'- -gCCGAGCUCGAGUuuggucauuuaguugUCGGCGGcgGCgGCGg -3'
miRNA:   3'- cgGGUUCGAGCUCG---------------AGCCGCC--UG-CGC- -5'
7635 3' -60.1 NC_001973.1 + 41777 0.72 0.401942
Target:  5'- aGCCgcuGCcCGAGaaCGGCGGGCGCGa -3'
miRNA:   3'- -CGGguuCGaGCUCgaGCCGCCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.