miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 158263 1.1 0.000728
Target:  5'- gAGCUGCGCGACGCGCCCUCGCCGUCCc -3'
miRNA:   3'- -UCGACGCGCUGCGCGGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 6423 0.8 0.090854
Target:  5'- cGGCgGCGCGccgacgaGCGCGCCCgUCGCCGgagCCg -3'
miRNA:   3'- -UCGaCGCGC-------UGCGCGGG-AGCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 27876 0.8 0.098197
Target:  5'- cGCggGCGCgGGCGCGCUCUCGCCGcgacUCCc -3'
miRNA:   3'- uCGa-CGCG-CUGCGCGGGAGCGGC----AGG- -5'
7640 5' -62.8 NC_001973.1 + 51814 0.79 0.116887
Target:  5'- uGCUGCGCGAgGCGCCCgcgugCGUggugCGUCUg -3'
miRNA:   3'- uCGACGCGCUgCGCGGGa----GCG----GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 53329 0.76 0.168548
Target:  5'- uGCaggGCGuCGAUGCGCCCgCGCCgGUCCc -3'
miRNA:   3'- uCGa--CGC-GCUGCGCGGGaGCGG-CAGG- -5'
7640 5' -62.8 NC_001973.1 + 35169 0.75 0.189889
Target:  5'- cGCUgGCGCGACGCaGCgaCCUCGUCG-CCg -3'
miRNA:   3'- uCGA-CGCGCUGCG-CG--GGAGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 121706 0.75 0.189889
Target:  5'- cGGCgGCgGCGuCGuCGUCCUCGUCGUCCc -3'
miRNA:   3'- -UCGaCG-CGCuGC-GCGGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 10544 0.75 0.213568
Target:  5'- cGGCU-CGaCGACGUGCUCgUCGCCGUUCu -3'
miRNA:   3'- -UCGAcGC-GCUGCGCGGG-AGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 132449 0.75 0.213568
Target:  5'- aGGCgccgGCGgGGCGCGgCCUCGUCGggcucgCCg -3'
miRNA:   3'- -UCGa---CGCgCUGCGCgGGAGCGGCa-----GG- -5'
7640 5' -62.8 NC_001973.1 + 118161 0.75 0.218598
Target:  5'- aAGCUgcaGCGCgGACGCGCCgC-CGCCG-CCg -3'
miRNA:   3'- -UCGA---CGCG-CUGCGCGG-GaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 87116 0.75 0.218598
Target:  5'- cGCgUGCGCGGCGUGCgCgCGCCGgugcgCCg -3'
miRNA:   3'- uCG-ACGCGCUGCGCGgGaGCGGCa----GG- -5'
7640 5' -62.8 NC_001973.1 + 34231 0.74 0.239738
Target:  5'- cAGCU-CGCG-CGCGUCgUUGCUGUCCa -3'
miRNA:   3'- -UCGAcGCGCuGCGCGGgAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 22971 0.73 0.268533
Target:  5'- cGC-GCgGCGGCGCGCCgaCGCCGacgCCg -3'
miRNA:   3'- uCGaCG-CGCUGCGCGGgaGCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 61121 0.73 0.278941
Target:  5'- cGGCgggGCGCGGCGuCGCuCCUcgagcucguaccggCGCCGcUCCg -3'
miRNA:   3'- -UCGa--CGCGCUGC-GCG-GGA--------------GCGGC-AGG- -5'
7640 5' -62.8 NC_001973.1 + 86728 0.73 0.283319
Target:  5'- aGGCUGCGCGgcgacgaacggcggcGCGCGgCCUCGU--UCCg -3'
miRNA:   3'- -UCGACGCGC---------------UGCGCgGGAGCGgcAGG- -5'
7640 5' -62.8 NC_001973.1 + 8810 0.73 0.287114
Target:  5'- cGCgGCGCGAagacaCGacgaGCCCgccCGCCGUCCc -3'
miRNA:   3'- uCGaCGCGCU-----GCg---CGGGa--GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 31979 0.73 0.287114
Target:  5'- gGGCUGCGCGccgaucuccgcCGCGCUCagGCCGUgCa -3'
miRNA:   3'- -UCGACGCGCu----------GCGCGGGagCGGCAgG- -5'
7640 5' -62.8 NC_001973.1 + 118443 0.72 0.293529
Target:  5'- gAGCgcaaGCGCGACaaaugGCGCCCgcCGUCGUCg -3'
miRNA:   3'- -UCGa---CGCGCUG-----CGCGGGa-GCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 76223 0.72 0.293529
Target:  5'- cGCUGacCGCGACGCGgCggcCGCCGUCUa -3'
miRNA:   3'- uCGAC--GCGCUGCGCgGga-GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 78195 0.72 0.306693
Target:  5'- gGGCaUGCGCaucaacgaGGCGCGCCaCUUGaCCGUCg -3'
miRNA:   3'- -UCG-ACGCG--------CUGCGCGG-GAGC-GGCAGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.