miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7642 3' -60.2 NC_001973.1 + 28214 0.66 0.821093
Target:  5'- ---aGUCGgCCACCCCGgagCGGCgaCa -3'
miRNA:   3'- ggagCAGCaGGUGGGGCa--GCCGgaGg -5'
7642 3' -60.2 NC_001973.1 + 37835 0.66 0.812924
Target:  5'- gCgUCGUCGcCCGCgUCGUCGucGCUUCg -3'
miRNA:   3'- -GgAGCAGCaGGUGgGGCAGC--CGGAGg -5'
7642 3' -60.2 NC_001973.1 + 88886 0.66 0.812924
Target:  5'- gCCUCGUCGUgCAgUCCGU--GCUUCg -3'
miRNA:   3'- -GGAGCAGCAgGUgGGGCAgcCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 35004 0.66 0.805446
Target:  5'- uCCUCGaCGccgccugcggcaacgCCACCCUccucgCGGCCUUCg -3'
miRNA:   3'- -GGAGCaGCa--------------GGUGGGGca---GCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 85979 0.66 0.804609
Target:  5'- aCUCGUUcUCgCuCCUCGaCGGCCUCUu -3'
miRNA:   3'- gGAGCAGcAG-GuGGGGCaGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 105914 0.66 0.803769
Target:  5'- gCCUCGUCGaugCCGaaaaacucuucguCCgCGUCGaGCUUCUu -3'
miRNA:   3'- -GGAGCAGCa--GGU-------------GGgGCAGC-CGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 150212 0.66 0.796154
Target:  5'- gCCUCGg---CUugCUgGgCGGCCUCCa -3'
miRNA:   3'- -GGAGCagcaGGugGGgCaGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 26606 0.66 0.787567
Target:  5'- gCCUCGacCG-CC-UCCCGUuuggCGGCUUCCa -3'
miRNA:   3'- -GGAGCa-GCaGGuGGGGCA----GCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 73054 0.66 0.787567
Target:  5'- uCCUCGuccUCGUCCucguCCUCGUCGauuuuguCCUCg -3'
miRNA:   3'- -GGAGC---AGCAGGu---GGGGCAGCc------GGAGg -5'
7642 3' -60.2 NC_001973.1 + 77546 0.66 0.787567
Target:  5'- gCCUCGUCGUCggCGCuCCUGacgaUGGCCcaCCa -3'
miRNA:   3'- -GGAGCAGCAG--GUG-GGGCa---GCCGGa-GG- -5'
7642 3' -60.2 NC_001973.1 + 97005 0.66 0.787567
Target:  5'- gCCUCGUCG--CGCgCCGUCGcCCUgCa -3'
miRNA:   3'- -GGAGCAGCagGUGgGGCAGCcGGAgG- -5'
7642 3' -60.2 NC_001973.1 + 100948 0.66 0.787567
Target:  5'- gCUCGgccacCGuuUCCACgUCGcUCGGCCUCg -3'
miRNA:   3'- gGAGCa----GC--AGGUGgGGC-AGCCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 158278 0.67 0.770025
Target:  5'- cCCUCGcCGUCCcCCUCGccCGaGCCgauuuUCCa -3'
miRNA:   3'- -GGAGCaGCAGGuGGGGCa-GC-CGG-----AGG- -5'
7642 3' -60.2 NC_001973.1 + 32782 0.67 0.770025
Target:  5'- uCCUCGUgCGacuuUUCGCCgCCG-CcGCCUCCg -3'
miRNA:   3'- -GGAGCA-GC----AGGUGG-GGCaGcCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 89099 0.67 0.770025
Target:  5'- -gUCGUCGUCgaGCUCCG-CGGgcgcgcucuCCUCCu -3'
miRNA:   3'- ggAGCAGCAGg-UGGGGCaGCC---------GGAGG- -5'
7642 3' -60.2 NC_001973.1 + 34364 0.67 0.752045
Target:  5'- --gCGUCGcCCuCCgCGUUGGCCUUUa -3'
miRNA:   3'- ggaGCAGCaGGuGGgGCAGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 121038 0.67 0.750225
Target:  5'- aCCUCuugcugcaccgCGUCCACCuuGUCgcucagGGCCUUg -3'
miRNA:   3'- -GGAGca---------GCAGGUGGggCAG------CCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 96219 0.67 0.74291
Target:  5'- aCCagaGUCG-CCGCCCCGUC-GCCg-- -3'
miRNA:   3'- -GGag-CAGCaGGUGGGGCAGcCGGagg -5'
7642 3' -60.2 NC_001973.1 + 83050 0.68 0.715017
Target:  5'- --gCGccCGUCgAgCCCG-CGGCCUCCu -3'
miRNA:   3'- ggaGCa-GCAGgUgGGGCaGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 73138 0.68 0.696092
Target:  5'- aCCUCGucgauuuuguccUCGUCCGcguCCUCGUCcGCgUCCu -3'
miRNA:   3'- -GGAGC------------AGCAGGU---GGGGCAGcCGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.