miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7649 3' -52.8 NC_001973.1 + 151148 1.04 0.009375
Target:  5'- gAUGACAUCAUGCCUCGGCCGAAAGAAu -3'
miRNA:   3'- -UACUGUAGUACGGAGCCGGCUUUCUU- -5'
7649 3' -52.8 NC_001973.1 + 151198 0.9 0.079678
Target:  5'- gAUGACAUCAUGCCUCGGCCGgcGGu- -3'
miRNA:   3'- -UACUGUAGUACGGAGCCGGCuuUCuu -5'
7649 3' -52.8 NC_001973.1 + 133259 0.74 0.624076
Target:  5'- gAUGGCGUCcagcucgGCCUCGGCCGcggccGAGAAc -3'
miRNA:   3'- -UACUGUAGua-----CGGAGCCGGCu----UUCUU- -5'
7649 3' -52.8 NC_001973.1 + 160602 0.73 0.698425
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 130933 0.73 0.698425
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 129207 0.73 0.698425
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 127415 0.73 0.698425
Target:  5'- gAUGACAUCAUGCCuaaacucgagcUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 160446 0.72 0.719272
Target:  5'- gAUGACAUCAUGCCuaaacugagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 12250 0.72 0.719272
Target:  5'- gAUGACAUCAUGCCuaaacccagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 130600 0.72 0.719272
Target:  5'- gAUGACAUCAUGCCuaaaccgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 130854 0.72 0.729578
Target:  5'- gAUGACAUCAUGCCuaaacucgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 129284 0.72 0.729578
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 12093 0.72 0.729578
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 21219 0.71 0.779528
Target:  5'- gAUGACAUCAUGCCgaacUCGGUgGAuuuuacgcgucGAGAu -3'
miRNA:   3'- -UACUGUAGUACGG----AGCCGgCU-----------UUCUu -5'
7649 3' -52.8 NC_001973.1 + 129040 0.71 0.779528
Target:  5'- gAUGACAUCAUGCCuaaacugagcUCGGuuGAu-GAAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCggCUuuCUU- -5'
7649 3' -52.8 NC_001973.1 + 127494 0.71 0.807857
Target:  5'- gAUGACAUCAUGCCuaaacugagcUCGGCgGGcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 16498 0.71 0.807857
Target:  5'- gAUGACAUCAUGCuucgcucgagCUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACG----------GAGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 16420 0.71 0.807857
Target:  5'- gAUGACAUCAUGCuucgcucgagCUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACG----------GAGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 127318 0.7 0.816967
Target:  5'- -cGACAUCAcGCCUCGaGcCCGAuGAGAu -3'
miRNA:   3'- uaCUGUAGUaCGGAGC-C-GGCU-UUCUu -5'
7649 3' -52.8 NC_001973.1 + 72190 0.7 0.816967
Target:  5'- aAUGACAUCAUGCugaaguugagCUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACG----------GAGCCGgCU-----UUCUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.