miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7659 5' -59.3 NC_001973.1 + 144977 0.66 0.813651
Target:  5'- gGCCAcCGGCagcccaUCGUCGAGGAggacuucuuggcggcUCCGg-- -3'
miRNA:   3'- -UGGU-GCCGg-----AGCAGCUCCU---------------GGGCaag -5'
7659 5' -59.3 NC_001973.1 + 139046 0.66 0.810266
Target:  5'- uGCCGCGGaagUCGgCGAaGugCCGUUCg -3'
miRNA:   3'- -UGGUGCCgg-AGCaGCUcCugGGCAAG- -5'
7659 5' -59.3 NC_001973.1 + 103910 0.66 0.810266
Target:  5'- cGCCGCGGCg-CGaCGAGGAgCgCGUcgUCg -3'
miRNA:   3'- -UGGUGCCGgaGCaGCUCCUgG-GCA--AG- -5'
7659 5' -59.3 NC_001973.1 + 53516 0.66 0.810266
Target:  5'- -aCACGGCCgCGcCGucGGGCCUGUa- -3'
miRNA:   3'- ugGUGCCGGaGCaGCu-CCUGGGCAag -5'
7659 5' -59.3 NC_001973.1 + 23719 0.66 0.801695
Target:  5'- aGCCGCuGGgCUCGcUGAcGGGCCCGa-- -3'
miRNA:   3'- -UGGUG-CCgGAGCaGCU-CCUGGGCaag -5'
7659 5' -59.3 NC_001973.1 + 45881 0.66 0.792981
Target:  5'- gGCCGCGGCgcugCUCGUCGAcuucgagacGGcACCgacgUGUUCg -3'
miRNA:   3'- -UGGUGCCG----GAGCAGCU---------CC-UGG----GCAAG- -5'
7659 5' -59.3 NC_001973.1 + 158627 0.66 0.792981
Target:  5'- uGCCGCcGCC-CGgcgcgccCGAcGACCCGUUCg -3'
miRNA:   3'- -UGGUGcCGGaGCa------GCUcCUGGGCAAG- -5'
7659 5' -59.3 NC_001973.1 + 124809 0.66 0.775153
Target:  5'- gGCCGgGGCCUCGaucggacggUCGAGGA---GUUCg -3'
miRNA:   3'- -UGGUgCCGGAGC---------AGCUCCUgggCAAG- -5'
7659 5' -59.3 NC_001973.1 + 27867 0.66 0.775153
Target:  5'- gGCCGCGGCCgCGggCGcGGGCgCGcUCu -3'
miRNA:   3'- -UGGUGCCGGaGCa-GCuCCUGgGCaAG- -5'
7659 5' -59.3 NC_001973.1 + 34019 0.67 0.756845
Target:  5'- uCCACGGCC-CgGUCGAGG-UUCGUg- -3'
miRNA:   3'- uGGUGCCGGaG-CAGCUCCuGGGCAag -5'
7659 5' -59.3 NC_001973.1 + 77870 0.67 0.756845
Target:  5'- uCCaACGGCCcacCGUCGAgcccgaGGACCUGUg- -3'
miRNA:   3'- uGG-UGCCGGa--GCAGCU------CCUGGGCAag -5'
7659 5' -59.3 NC_001973.1 + 7327 0.67 0.719057
Target:  5'- -gCGCGGCCcgcccguguuugUCGUCGAgaaaacGGACCCGc-- -3'
miRNA:   3'- ugGUGCCGG------------AGCAGCU------CCUGGGCaag -5'
7659 5' -59.3 NC_001973.1 + 36318 0.68 0.660444
Target:  5'- cGCCGCGGCCgacgCGgcCGAcgcGGGCCucggCGUUCa -3'
miRNA:   3'- -UGGUGCCGGa---GCa-GCU---CCUGG----GCAAG- -5'
7659 5' -59.3 NC_001973.1 + 39815 0.69 0.601045
Target:  5'- gGCCACGGCCUcCGaCaGGGGCuCCGcgCg -3'
miRNA:   3'- -UGGUGCCGGA-GCaGcUCCUG-GGCaaG- -5'
7659 5' -59.3 NC_001973.1 + 7760 0.69 0.601045
Target:  5'- aACCGCGGCggcggcggCGUCGAGGAgCUGg-- -3'
miRNA:   3'- -UGGUGCCGga------GCAGCUCCUgGGCaag -5'
7659 5' -59.3 NC_001973.1 + 55416 0.7 0.590197
Target:  5'- aACgACGGUUUCGUCGGcggcggcGGGCCCGa-- -3'
miRNA:   3'- -UGgUGCCGGAGCAGCU-------CCUGGGCaag -5'
7659 5' -59.3 NC_001973.1 + 80082 0.7 0.571543
Target:  5'- gGCgCuuGGCCgUCGUCGAGGuCUCGUUg -3'
miRNA:   3'- -UG-GugCCGG-AGCAGCUCCuGGGCAAg -5'
7659 5' -59.3 NC_001973.1 + 24304 0.72 0.467513
Target:  5'- gACCACGGCgCgCGUCGAcgccgaagaGGugCUGUUCc -3'
miRNA:   3'- -UGGUGCCG-GaGCAGCU---------CCugGGCAAG- -5'
7659 5' -59.3 NC_001973.1 + 132462 0.72 0.458519
Target:  5'- -gCGCGGCCUCGUCGGGcucGCCgCGaUCa -3'
miRNA:   3'- ugGUGCCGGAGCAGCUCc--UGG-GCaAG- -5'
7659 5' -59.3 NC_001973.1 + 143490 0.74 0.358533
Target:  5'- uCCGCGGCgUCGUCGAGGGUCaCGcUCa -3'
miRNA:   3'- uGGUGCCGgAGCAGCUCCUGG-GCaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.