miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 3' -53.6 NC_001973.1 + 158932 0.66 0.975641
Target:  5'- cGCGCGCGaccgAGCCGcc-CGCGUccgCGAc -3'
miRNA:   3'- -UGCGCGU----UCGGCuuaGCGCAcaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 3570 0.66 0.975641
Target:  5'- gGCGCGCGAuGaCCGAcggCGCGcGcUUCGGc -3'
miRNA:   3'- -UGCGCGUU-C-GGCUua-GCGCaC-AAGCU- -5'
7661 3' -53.6 NC_001973.1 + 6229 0.66 0.975641
Target:  5'- -gGCGCccuGUCGGAUUGCGcgaaaacgccUGUUCGGc -3'
miRNA:   3'- ugCGCGuu-CGGCUUAGCGC----------ACAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 79767 0.66 0.973002
Target:  5'- gACGUGUAcucGUCGAcgAUCGCGccgaaauagUGUUCGAa -3'
miRNA:   3'- -UGCGCGUu--CGGCU--UAGCGC---------ACAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 107074 0.66 0.973002
Target:  5'- cGCGCGCAcucgAGCCG-GUCGC----UCGAc -3'
miRNA:   3'- -UGCGCGU----UCGGCuUAGCGcacaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 120543 0.66 0.973002
Target:  5'- aACGCGCugcaaacggacAAGCUGu-UCGUGUG-UCGGg -3'
miRNA:   3'- -UGCGCG-----------UUCGGCuuAGCGCACaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 137008 0.66 0.973002
Target:  5'- aGCGCGUgcGCCGggUCGC-----CGAa -3'
miRNA:   3'- -UGCGCGuuCGGCuuAGCGcacaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 110865 0.66 0.970162
Target:  5'- uACGCGU--GCCGGcgCGCGgaccUCGAc -3'
miRNA:   3'- -UGCGCGuuCGGCUuaGCGCaca-AGCU- -5'
7661 3' -53.6 NC_001973.1 + 7909 0.66 0.967114
Target:  5'- gGCGUucuguuGCGAGgCGGAgCGCGUGUgcgCGGc -3'
miRNA:   3'- -UGCG------CGUUCgGCUUaGCGCACAa--GCU- -5'
7661 3' -53.6 NC_001973.1 + 69633 0.66 0.967114
Target:  5'- gACGCGCAAGUCGGG-CGCGcccuccGUUUu- -3'
miRNA:   3'- -UGCGCGUUCGGCUUaGCGCa-----CAAGcu -5'
7661 3' -53.6 NC_001973.1 + 105727 0.66 0.967114
Target:  5'- -gGCGCGGcGCCGuuUCGUGUuGcUCGAc -3'
miRNA:   3'- ugCGCGUU-CGGCuuAGCGCA-CaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 144246 0.66 0.967114
Target:  5'- uGCGCGCuGGCgGAcgagggCGCGUucgUCGAa -3'
miRNA:   3'- -UGCGCGuUCGgCUua----GCGCAca-AGCU- -5'
7661 3' -53.6 NC_001973.1 + 7083 0.66 0.963853
Target:  5'- -aGCGCGAGuuGAGUCcgGCGcGcgCGAc -3'
miRNA:   3'- ugCGCGUUCggCUUAG--CGCaCaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 94853 0.66 0.963175
Target:  5'- gGCGCGCAccucgacccgcuGCCGuacgaCGCGUGgcUCGAa -3'
miRNA:   3'- -UGCGCGUu-----------CGGCuua--GCGCACa-AGCU- -5'
7661 3' -53.6 NC_001973.1 + 26553 0.66 0.960372
Target:  5'- -aGCGCAAccauuCCGAGUCGCGgg--CGAu -3'
miRNA:   3'- ugCGCGUUc----GGCUUAGCGCacaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 97100 0.66 0.960372
Target:  5'- cACGCGCAAGuuGAcguggCGCGaccUGgaguuggUCGAg -3'
miRNA:   3'- -UGCGCGUUCggCUua---GCGC---ACa------AGCU- -5'
7661 3' -53.6 NC_001973.1 + 118133 0.66 0.960372
Target:  5'- gGCGCGCGAGCCcaauacguuUUGCGUGa---- -3'
miRNA:   3'- -UGCGCGUUCGGcuu------AGCGCACaagcu -5'
7661 3' -53.6 NC_001973.1 + 33654 0.66 0.960012
Target:  5'- gGCGCGUcgucuucGAGCCGcacguAGUUGCGcuUGUUCGu -3'
miRNA:   3'- -UGCGCG-------UUCGGC-----UUAGCGC--ACAAGCu -5'
7661 3' -53.6 NC_001973.1 + 39406 0.66 0.959284
Target:  5'- cGCGCGcCAGGUCGGccgcggugaggcgcGUCGCGUccaGggCGAc -3'
miRNA:   3'- -UGCGC-GUUCGGCU--------------UAGCGCA---CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 10247 0.67 0.958176
Target:  5'- cACGCGCAgcGGgCGGcaguacggaguuugcGUCGCGUcgUCGAa -3'
miRNA:   3'- -UGCGCGU--UCgGCU---------------UAGCGCAcaAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.