Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7666 | 5' | -49.8 | NC_001973.1 | + | 84008 | 0.66 | 0.998334 |
Target: 5'- cCCGGCUg-AAGGcGCagaGCGAGcuGAACc -3' miRNA: 3'- -GGCCGAagUUCCaCG---CGCUUuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 106962 | 0.66 | 0.998001 |
Target: 5'- gCCgGGCgcgcUCGGcGUGCGCGcgcugcAGAGGAACa -3' miRNA: 3'- -GG-CCGa---AGUUcCACGCGC------UUUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 14360 | 0.66 | 0.998001 |
Target: 5'- gUCGGCguggUCGAcGGgGCGCGgcGAGGc- -3' miRNA: 3'- -GGCCGa---AGUU-CCaCGCGCuuUUCUug -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 52185 | 0.66 | 0.998001 |
Target: 5'- aCGaGCgcggCGGGGUcGCGCGAcucGAGCa -3' miRNA: 3'- gGC-CGaa--GUUCCA-CGCGCUuuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 9643 | 0.66 | 0.998001 |
Target: 5'- uUCGGC-UCGAGG-GCGCGGu------ -3' miRNA: 3'- -GGCCGaAGUUCCaCGCGCUuuucuug -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 6504 | 0.66 | 0.997613 |
Target: 5'- aCCGGCUgggcggcgCGGGcGUGCcgacgauuuuGCGGcugguGAAGAACa -3' miRNA: 3'- -GGCCGAa-------GUUC-CACG----------CGCU-----UUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 84256 | 0.66 | 0.997613 |
Target: 5'- gCGGCg--GAGGUgcucgcgcugagGCGCGAcaaAGAGGACc -3' miRNA: 3'- gGCCGaagUUCCA------------CGCGCU---UUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 111075 | 0.66 | 0.997613 |
Target: 5'- gCGGCgccCGAcguGGgccGCGuCGAGGAGAGCg -3' miRNA: 3'- gGCCGaa-GUU---CCa--CGC-GCUUUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 144251 | 0.66 | 0.997571 |
Target: 5'- gCUGGCggaCGAGG-GCGCguucgucGAAAAGAAa -3' miRNA: 3'- -GGCCGaa-GUUCCaCGCG-------CUUUUCUUg -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 19529 | 0.66 | 0.997117 |
Target: 5'- aCGGUUUaCAAggcGGUGCGCGGcguuuacgugcccGAcuGGAACg -3' miRNA: 3'- gGCCGAA-GUU---CCACGCGCU-------------UU--UCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 77673 | 0.66 | 0.996649 |
Target: 5'- aCCGGCa--GAGGUGCucgcccgaCGAGgucAAGAACa -3' miRNA: 3'- -GGCCGaagUUCCACGc-------GCUU---UUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 93939 | 0.66 | 0.996649 |
Target: 5'- gCUGGaCgagcgCGAGcUGCGCGAGAAGuACg -3' miRNA: 3'- -GGCC-Gaa---GUUCcACGCGCUUUUCuUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 10756 | 0.67 | 0.996058 |
Target: 5'- gCGGC----GGGUGCGCGAc--GGGCu -3' miRNA: 3'- gGCCGaaguUCCACGCGCUuuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 83032 | 0.67 | 0.995385 |
Target: 5'- uUCGGCgggCGAGGcgGCGCGcccGucGAGCc -3' miRNA: 3'- -GGCCGaa-GUUCCa-CGCGCu--UuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 144338 | 0.67 | 0.99462 |
Target: 5'- cCCGGg--CAAgcGGaUGCGCGAGgacGAGGACg -3' miRNA: 3'- -GGCCgaaGUU--CC-ACGCGCUU---UUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 109309 | 0.67 | 0.99462 |
Target: 5'- gUCGGggUCGAGGagcgcgucgcGCGCGAAccGGAACa -3' miRNA: 3'- -GGCCgaAGUUCCa---------CGCGCUUu-UCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 61017 | 0.67 | 0.993756 |
Target: 5'- uCCGGCg--GAGGcGCGCGAcgcAGGAGu -3' miRNA: 3'- -GGCCGaagUUCCaCGCGCUu--UUCUUg -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 56004 | 0.67 | 0.992785 |
Target: 5'- uCCGGa---GAGGcGCGCGAcgaGGAGGAUg -3' miRNA: 3'- -GGCCgaagUUCCaCGCGCU---UUUCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 52785 | 0.68 | 0.991696 |
Target: 5'- gCCGGCcgUCGAGacucUGCGCGGc--GAACu -3' miRNA: 3'- -GGCCGa-AGUUCc---ACGCGCUuuuCUUG- -5' |
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7666 | 5' | -49.8 | NC_001973.1 | + | 74126 | 0.68 | 0.991696 |
Target: 5'- gCCGGUgccgUCGGGGaauUGCGCGcagcGAGAGu -3' miRNA: 3'- -GGCCGa---AGUUCC---ACGCGCuu--UUCUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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