miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7666 5' -49.8 NC_001973.1 + 6504 0.66 0.997613
Target:  5'- aCCGGCUgggcggcgCGGGcGUGCcgacgauuuuGCGGcugguGAAGAACa -3'
miRNA:   3'- -GGCCGAa-------GUUC-CACG----------CGCU-----UUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 9643 0.66 0.998001
Target:  5'- uUCGGC-UCGAGG-GCGCGGu------ -3'
miRNA:   3'- -GGCCGaAGUUCCaCGCGCUuuucuug -5'
7666 5' -49.8 NC_001973.1 + 10756 0.67 0.996058
Target:  5'- gCGGC----GGGUGCGCGAc--GGGCu -3'
miRNA:   3'- gGCCGaaguUCCACGCGCUuuuCUUG- -5'
7666 5' -49.8 NC_001973.1 + 14360 0.66 0.998001
Target:  5'- gUCGGCguggUCGAcGGgGCGCGgcGAGGc- -3'
miRNA:   3'- -GGCCGa---AGUU-CCaCGCGCuuUUCUug -5'
7666 5' -49.8 NC_001973.1 + 14618 0.7 0.969371
Target:  5'- cCCGGCUguc-GGUGCGCGAc------ -3'
miRNA:   3'- -GGCCGAaguuCCACGCGCUuuucuug -5'
7666 5' -49.8 NC_001973.1 + 19529 0.66 0.997117
Target:  5'- aCGGUUUaCAAggcGGUGCGCGGcguuuacgugcccGAcuGGAACg -3'
miRNA:   3'- gGCCGAA-GUU---CCACGCGCU-------------UU--UCUUG- -5'
7666 5' -49.8 NC_001973.1 + 38844 0.73 0.881434
Target:  5'- gCGGCggCGAGG-GCGCGGGc-GAACa -3'
miRNA:   3'- gGCCGaaGUUCCaCGCGCUUuuCUUG- -5'
7666 5' -49.8 NC_001973.1 + 45448 0.69 0.984174
Target:  5'- gUCGGgUugUCGcacAGGUGCGCGcAAucGAACg -3'
miRNA:   3'- -GGCCgA--AGU---UCCACGCGC-UUuuCUUG- -5'
7666 5' -49.8 NC_001973.1 + 52185 0.66 0.998001
Target:  5'- aCGaGCgcggCGGGGUcGCGCGAcucGAGCa -3'
miRNA:   3'- gGC-CGaa--GUUCCA-CGCGCUuuuCUUG- -5'
7666 5' -49.8 NC_001973.1 + 52785 0.68 0.991696
Target:  5'- gCCGGCcgUCGAGacucUGCGCGGc--GAACu -3'
miRNA:   3'- -GGCCGa-AGUUCc---ACGCGCUuuuCUUG- -5'
7666 5' -49.8 NC_001973.1 + 52933 0.68 0.987636
Target:  5'- uCgGGCggaAAGGUGUacGCGuGAAAGAGCg -3'
miRNA:   3'- -GgCCGaagUUCCACG--CGC-UUUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 56004 0.67 0.992785
Target:  5'- uCCGGa---GAGGcGCGCGAcgaGGAGGAUg -3'
miRNA:   3'- -GGCCgaagUUCCaCGCGCU---UUUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 58776 0.7 0.969371
Target:  5'- gCCGGCgcgCcguggugaaccuGAGcGUGCGCGAGcuGGAGCu -3'
miRNA:   3'- -GGCCGaa-G------------UUC-CACGCGCUUu-UCUUG- -5'
7666 5' -49.8 NC_001973.1 + 60083 0.71 0.937087
Target:  5'- aCCGaGUUUC-AGGUGCGCGAcguGGuGGCg -3'
miRNA:   3'- -GGC-CGAAGuUCCACGCGCUuu-UC-UUG- -5'
7666 5' -49.8 NC_001973.1 + 61017 0.67 0.993756
Target:  5'- uCCGGCg--GAGGcGCGCGAcgcAGGAGu -3'
miRNA:   3'- -GGCCGaagUUCCaCGCGCUu--UUCUUg -5'
7666 5' -49.8 NC_001973.1 + 74126 0.68 0.991696
Target:  5'- gCCGGUgccgUCGGGGaauUGCGCGcagcGAGAGu -3'
miRNA:   3'- -GGCCGa---AGUUCC---ACGCGCuu--UUCUUg -5'
7666 5' -49.8 NC_001973.1 + 77673 0.66 0.996649
Target:  5'- aCCGGCa--GAGGUGCucgcccgaCGAGgucAAGAACa -3'
miRNA:   3'- -GGCCGaagUUCCACGc-------GCUU---UUCUUG- -5'
7666 5' -49.8 NC_001973.1 + 78423 0.73 0.888623
Target:  5'- aCGGCUguUCGAGGaggccgGCGUGGAGAuGGACc -3'
miRNA:   3'- gGCCGA--AGUUCCa-----CGCGCUUUU-CUUG- -5'
7666 5' -49.8 NC_001973.1 + 83032 0.67 0.995385
Target:  5'- uUCGGCgggCGAGGcgGCGCGcccGucGAGCc -3'
miRNA:   3'- -GGCCGaa-GUUCCa-CGCGCu--UuuCUUG- -5'
7666 5' -49.8 NC_001973.1 + 84008 0.66 0.998334
Target:  5'- cCCGGCUg-AAGGcGCagaGCGAGcuGAACc -3'
miRNA:   3'- -GGCCGAagUUCCaCG---CGCUUuuCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.