miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7668 5' -56.3 NC_001973.1 + 137982 1.11 0.002168
Target:  5'- aGUUGCGGCCCGUGCCGUAAUAGGCGCc -3'
miRNA:   3'- -CAACGCCGGGCACGGCAUUAUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 27840 0.77 0.336938
Target:  5'- cUUGCGGCCCGguugGCCGgcgcuGGCGg -3'
miRNA:   3'- cAACGCCGGGCa---CGGCauuauCCGCg -5'
7668 5' -56.3 NC_001973.1 + 157882 0.77 0.344558
Target:  5'- -cUGCGGCUCGUGUCGg---AGGuCGCg -3'
miRNA:   3'- caACGCCGGGCACGGCauuaUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 147059 0.77 0.344558
Target:  5'- --aGCGGUUCGUGCCGaucu-GGCGCg -3'
miRNA:   3'- caaCGCCGGGCACGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 74787 0.72 0.580638
Target:  5'- -gUGCGGUC---GCCGggGUGGGCGCg -3'
miRNA:   3'- caACGCCGGgcaCGGCauUAUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 6210 0.71 0.6213
Target:  5'- --gGCGGCgCgGUGCCGgcgc-GGCGCc -3'
miRNA:   3'- caaCGCCG-GgCACGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 121458 0.71 0.631504
Target:  5'- ---aCGGCCCc-GCCGgaauAUGGGCGCg -3'
miRNA:   3'- caacGCCGGGcaCGGCau--UAUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 87538 0.71 0.662088
Target:  5'- ---aCGGCCgGUGCCGgucgAGGcCGCa -3'
miRNA:   3'- caacGCCGGgCACGGCauuaUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 47692 0.7 0.702489
Target:  5'- -aUGCGGCCguaCGUGCCGggcggcAGGCa- -3'
miRNA:   3'- caACGCCGG---GCACGGCauua--UCCGcg -5'
7668 5' -56.3 NC_001973.1 + 10051 0.69 0.761137
Target:  5'- --gGUGGCgCaCGUGCCGc---AGGCGCc -3'
miRNA:   3'- caaCGCCG-G-GCACGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 150865 0.69 0.761137
Target:  5'- -cUGUccgGGCCUG-GCCGgagccgGGGCGCg -3'
miRNA:   3'- caACG---CCGGGCaCGGCauua--UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 103938 0.69 0.779874
Target:  5'- --cGCGGCgcggggCGUGCCGUcgc-GGCGCc -3'
miRNA:   3'- caaCGCCGg-----GCACGGCAuuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 105486 0.69 0.779874
Target:  5'- -aUGUGGCCgGgcgcguugccGCCGUAGUugAGGuCGCa -3'
miRNA:   3'- caACGCCGGgCa---------CGGCAUUA--UCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 22341 0.69 0.779874
Target:  5'- -gUGgGGUCCGUGgUGcUGAUAgcGGCGCu -3'
miRNA:   3'- caACgCCGGGCACgGC-AUUAU--CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 146068 0.68 0.78905
Target:  5'- --cGCGGCgCCGaGCCGgcucGGGCGg -3'
miRNA:   3'- caaCGCCG-GGCaCGGCauuaUCCGCg -5'
7668 5' -56.3 NC_001973.1 + 10473 0.68 0.798085
Target:  5'- --aGCcacacGCCCGUGCUGggGUugcacgagcGGGCGCg -3'
miRNA:   3'- caaCGc----CGGGCACGGCauUA---------UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 85159 0.68 0.801658
Target:  5'- -cUGCGcGCCCGacuggucguagcgauUGUCGUugaAAUAGGaCGCg -3'
miRNA:   3'- caACGC-CGGGC---------------ACGGCA---UUAUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 90282 0.68 0.8157
Target:  5'- --cGuCGGCUCG-GCCGguguucaAGGCGCa -3'
miRNA:   3'- caaC-GCCGGGCaCGGCauua---UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 96884 0.68 0.8157
Target:  5'- --cGCGGaUCUGUGCgCGgc--GGGCGCg -3'
miRNA:   3'- caaCGCC-GGGCACG-GCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 133283 0.68 0.824262
Target:  5'- --cGCGGCCgagaaCGcgGCCGgcGgcGGCGCc -3'
miRNA:   3'- caaCGCCGG-----GCa-CGGCauUauCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.