miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7668 5' -56.3 NC_001973.1 + 94404 0.67 0.856702
Target:  5'- --cGCGGCCCGcggcGCCGcccgGAccGGCGg -3'
miRNA:   3'- caaCGCCGGGCa---CGGCa---UUauCCGCg -5'
7668 5' -56.3 NC_001973.1 + 106416 0.67 0.848878
Target:  5'- -gUGCGGCgCGacGCCGagcgcGGCGCa -3'
miRNA:   3'- caACGCCGgGCa-CGGCauuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 87979 0.67 0.848878
Target:  5'- --gGuCGGCCCGUcggucgcguuGCCGUuuuuGGCGUu -3'
miRNA:   3'- caaC-GCCGGGCA----------CGGCAuuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 40496 0.67 0.848878
Target:  5'- --aGCGGCCUGaucaCCGUGAc-GGCGUg -3'
miRNA:   3'- caaCGCCGGGCac--GGCAUUauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 7844 0.67 0.840859
Target:  5'- --gGCGGCgCCGcGcCCGUcGAgcuGGCGCg -3'
miRNA:   3'- caaCGCCG-GGCaC-GGCA-UUau-CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 44681 0.67 0.840859
Target:  5'- --gGCGGCUCGUggagGCCGgUGAUcgagaugggaaAGGUGCc -3'
miRNA:   3'- caaCGCCGGGCA----CGGC-AUUA-----------UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 55956 0.68 0.832652
Target:  5'- ----gGGCCCGUucuGUCGggagAGGCGCg -3'
miRNA:   3'- caacgCCGGGCA---CGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 133283 0.68 0.824262
Target:  5'- --cGCGGCCgagaaCGcgGCCGgcGgcGGCGCc -3'
miRNA:   3'- caaCGCCGG-----GCa-CGGCauUauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 106648 0.68 0.824262
Target:  5'- --cGCGGCCaagGUcGCCG----AGGCGCu -3'
miRNA:   3'- caaCGCCGGg--CA-CGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 90282 0.68 0.8157
Target:  5'- --cGuCGGCUCG-GCCGguguucaAGGCGCa -3'
miRNA:   3'- caaC-GCCGGGCaCGGCauua---UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 96884 0.68 0.8157
Target:  5'- --cGCGGaUCUGUGCgCGgc--GGGCGCg -3'
miRNA:   3'- caaCGCC-GGGCACG-GCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 85159 0.68 0.801658
Target:  5'- -cUGCGcGCCCGacuggucguagcgauUGUCGUugaAAUAGGaCGCg -3'
miRNA:   3'- caACGC-CGGGC---------------ACGGCA---UUAUCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 10473 0.68 0.798085
Target:  5'- --aGCcacacGCCCGUGCUGggGUugcacgagcGGGCGCg -3'
miRNA:   3'- caaCGc----CGGGCACGGCauUA---------UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 146068 0.68 0.78905
Target:  5'- --cGCGGCgCCGaGCCGgcucGGGCGg -3'
miRNA:   3'- caaCGCCG-GGCaCGGCauuaUCCGCg -5'
7668 5' -56.3 NC_001973.1 + 22341 0.69 0.779874
Target:  5'- -gUGgGGUCCGUGgUGcUGAUAgcGGCGCu -3'
miRNA:   3'- caACgCCGGGCACgGC-AUUAU--CCGCG- -5'
7668 5' -56.3 NC_001973.1 + 103938 0.69 0.779874
Target:  5'- --cGCGGCgcggggCGUGCCGUcgc-GGCGCc -3'
miRNA:   3'- caaCGCCGg-----GCACGGCAuuauCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 105486 0.69 0.779874
Target:  5'- -aUGUGGCCgGgcgcguugccGCCGUAGUugAGGuCGCa -3'
miRNA:   3'- caACGCCGGgCa---------CGGCAUUA--UCC-GCG- -5'
7668 5' -56.3 NC_001973.1 + 150865 0.69 0.761137
Target:  5'- -cUGUccgGGCCUG-GCCGgagccgGGGCGCg -3'
miRNA:   3'- caACG---CCGGGCaCGGCauua--UCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 10051 0.69 0.761137
Target:  5'- --gGUGGCgCaCGUGCCGc---AGGCGCc -3'
miRNA:   3'- caaCGCCG-G-GCACGGCauuaUCCGCG- -5'
7668 5' -56.3 NC_001973.1 + 47692 0.7 0.702489
Target:  5'- -aUGCGGCCguaCGUGCCGggcggcAGGCa- -3'
miRNA:   3'- caACGCCGG---GCACGGCauua--UCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.