miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7671 5' -56.9 NC_001973.1 + 158471 0.66 0.890492
Target:  5'- gUC-CGAUCGGCUCGUCCgCGccCGAg -3'
miRNA:   3'- aGGaGCUAGCCGAGCGGGaGCaaGUU- -5'
7671 5' -56.9 NC_001973.1 + 87921 0.66 0.883681
Target:  5'- aCUuggCGAUCaGCUCGCUCUUGcUCAAg -3'
miRNA:   3'- aGGa--GCUAGcCGAGCGGGAGCaAGUU- -5'
7671 5' -56.9 NC_001973.1 + 119197 0.66 0.8694
Target:  5'- gCCgaagaagcgCGG-CGGCUCGCCCUgCG-UCGAg -3'
miRNA:   3'- aGGa--------GCUaGCCGAGCGGGA-GCaAGUU- -5'
7671 5' -56.9 NC_001973.1 + 133895 0.66 0.861941
Target:  5'- aCCUCGuucUCGGC--GCCCUCGcgCGu -3'
miRNA:   3'- aGGAGCu--AGCCGagCGGGAGCaaGUu -5'
7671 5' -56.9 NC_001973.1 + 89502 0.66 0.854277
Target:  5'- gUCUUCG--UGGCg-GUCCUCGUUCAAg -3'
miRNA:   3'- -AGGAGCuaGCCGagCGGGAGCAAGUU- -5'
7671 5' -56.9 NC_001973.1 + 92450 0.67 0.846414
Target:  5'- -aCUCGAacUUGGaCUCGUCCUCGUcCGc -3'
miRNA:   3'- agGAGCU--AGCC-GAGCGGGAGCAaGUu -5'
7671 5' -56.9 NC_001973.1 + 73017 0.67 0.846414
Target:  5'- gUCCUCGuccUCGucCUCGUCCUCGUccUCGu -3'
miRNA:   3'- -AGGAGCu--AGCc-GAGCGGGAGCA--AGUu -5'
7671 5' -56.9 NC_001973.1 + 73053 0.67 0.838359
Target:  5'- gUCCUCGuccUCGucCUCGUCCUCG-UCGAu -3'
miRNA:   3'- -AGGAGCu--AGCc-GAGCGGGAGCaAGUU- -5'
7671 5' -56.9 NC_001973.1 + 138218 0.67 0.830118
Target:  5'- cCCUCGAUCGGCaCuaUCUCGUccugCAGa -3'
miRNA:   3'- aGGAGCUAGCCGaGcgGGAGCAa---GUU- -5'
7671 5' -56.9 NC_001973.1 + 157951 0.67 0.830118
Target:  5'- aCCUCGG-CGGUcgagUCGCCCggcgugcucaCGUUCGAu -3'
miRNA:   3'- aGGAGCUaGCCG----AGCGGGa---------GCAAGUU- -5'
7671 5' -56.9 NC_001973.1 + 121193 0.67 0.813111
Target:  5'- aCCgcgCGAUCucgaaCUCGCCCUCGgUCAGa -3'
miRNA:   3'- aGGa--GCUAGcc---GAGCGGGAGCaAGUU- -5'
7671 5' -56.9 NC_001973.1 + 89129 0.68 0.80436
Target:  5'- cUCCUCccaAUCGaGCUCGCCgUCGcucUCAAa -3'
miRNA:   3'- -AGGAGc--UAGC-CGAGCGGgAGCa--AGUU- -5'
7671 5' -56.9 NC_001973.1 + 130347 0.68 0.777214
Target:  5'- aUCgUCGAUCgaGGCcgcCGCCCUCG-UCAu -3'
miRNA:   3'- -AGgAGCUAG--CCGa--GCGGGAGCaAGUu -5'
7671 5' -56.9 NC_001973.1 + 56262 0.68 0.777214
Target:  5'- cUUCUCGGcUCGGagucCUCGCCCUCGg---- -3'
miRNA:   3'- -AGGAGCU-AGCC----GAGCGGGAGCaaguu -5'
7671 5' -56.9 NC_001973.1 + 123481 0.7 0.68982
Target:  5'- cUCgUCGAggCGGCUCGCCggCUCGUcgCAc -3'
miRNA:   3'- -AGgAGCUa-GCCGAGCGG--GAGCAa-GUu -5'
7671 5' -56.9 NC_001973.1 + 69998 0.72 0.578308
Target:  5'- gUCgUCGAUCgGGC-CGCCCUCGacCAGc -3'
miRNA:   3'- -AGgAGCUAG-CCGaGCGGGAGCaaGUU- -5'
7671 5' -56.9 NC_001973.1 + 45512 0.76 0.366024
Target:  5'- gCgUCGAcaugcauUUGaGCUCGCCCUCGUUCAGg -3'
miRNA:   3'- aGgAGCU-------AGC-CGAGCGGGAGCAAGUU- -5'
7671 5' -56.9 NC_001973.1 + 132660 1.06 0.003807
Target:  5'- gUCCUCGAUCGGCUCGCCCUCGUUCAAc -3'
miRNA:   3'- -AGGAGCUAGCCGAGCGGGAGCAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.