Results 1 - 20 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7675 | 3' | -54.7 | NC_001973.1 | + | 23662 | 0.66 | 0.950599 |
Target: 5'- gGGACUCGAGaUCGGUGcuCGCGg-- -3' miRNA: 3'- aUUUGAGCUCgAGCCGCcuGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 9683 | 0.66 | 0.950599 |
Target: 5'- ---cCUCG-GCgaaCGGCGG-CGCGUAc -3' miRNA: 3'- auuuGAGCuCGa--GCCGCCuGCGCAUc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 137261 | 0.66 | 0.949339 |
Target: 5'- cGAGC-CGAGUgugCGGCGGcggggcucggccgcGCGCGUu- -3' miRNA: 3'- aUUUGaGCUCGa--GCCGCC--------------UGCGCAuc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 60440 | 0.66 | 0.946317 |
Target: 5'- -cAGCUCGAGC-CGcagcaguacGUGGACGCGc-- -3' miRNA: 3'- auUUGAGCUCGaGC---------CGCCUGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 20471 | 0.66 | 0.946317 |
Target: 5'- --uACUCGccCUCGGCGcACaGCGUGGg -3' miRNA: 3'- auuUGAGCucGAGCCGCcUG-CGCAUC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 95969 | 0.66 | 0.941799 |
Target: 5'- -----aCGAGa-CGGCGGGCGCGcUGGu -3' miRNA: 3'- auuugaGCUCgaGCCGCCUGCGC-AUC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 121307 | 0.66 | 0.941799 |
Target: 5'- -cGGCgCGcGC-CGGCGGACGCGc-- -3' miRNA: 3'- auUUGaGCuCGaGCCGCCUGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 62933 | 0.66 | 0.941799 |
Target: 5'- -cGACUCGGGC-CGGCGu-CGUcaGUAGa -3' miRNA: 3'- auUUGAGCUCGaGCCGCcuGCG--CAUC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 30380 | 0.66 | 0.937041 |
Target: 5'- -cGACUCGGGUgcgGGCcGGCGCGgcGg -3' miRNA: 3'- auUUGAGCUCGag-CCGcCUGCGCauC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 77014 | 0.66 | 0.937041 |
Target: 5'- ----gUCGGGCggCGGCGGcGCGCGc-- -3' miRNA: 3'- auuugAGCUCGa-GCCGCC-UGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 122429 | 0.66 | 0.937041 |
Target: 5'- -cGACUCGAGCUCGuuGCGG-CGa-UAGu -3' miRNA: 3'- auUUGAGCUCGAGC--CGCCuGCgcAUC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 124188 | 0.66 | 0.937041 |
Target: 5'- ---cCUCGAGCgcgaggucgCGGCGG-CGCGc-- -3' miRNA: 3'- auuuGAGCUCGa--------GCCGCCuGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 83950 | 0.66 | 0.932042 |
Target: 5'- --cGCUCG-Ga--GGCGGGCGCGUcgAGg -3' miRNA: 3'- auuUGAGCuCgagCCGCCUGCGCA--UC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 23555 | 0.67 | 0.921316 |
Target: 5'- aAuuCUCGAccgcagccgGC-CGGCGGACGCGc-- -3' miRNA: 3'- aUuuGAGCU---------CGaGCCGCCUGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 61194 | 0.67 | 0.91559 |
Target: 5'- cUGAACgCGcGCUCgGGCGGGCGCc--- -3' miRNA: 3'- -AUUUGaGCuCGAG-CCGCCUGCGcauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 106677 | 0.67 | 0.915004 |
Target: 5'- --cGCUCGAcgaucucgacgucGCuUUGGCGGGCGCGc-- -3' miRNA: 3'- auuUGAGCU-------------CG-AGCCGCCUGCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 146023 | 0.67 | 0.909622 |
Target: 5'- -cGGCUCGAGCgCGGgucgaCGGACGgGgcGa -3' miRNA: 3'- auUUGAGCUCGaGCC-----GCCUGCgCauC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 120375 | 0.67 | 0.909622 |
Target: 5'- aAGACggCGAGUUUGGCGGG-GCGa-- -3' miRNA: 3'- aUUUGa-GCUCGAGCCGCCUgCGCauc -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 96886 | 0.68 | 0.896972 |
Target: 5'- cGGAUcUGuGCgCGGCGGGCGCGUcGGa -3' miRNA: 3'- aUUUGaGCuCGaGCCGCCUGCGCA-UC- -5' |
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7675 | 3' | -54.7 | NC_001973.1 | + | 71779 | 0.68 | 0.896972 |
Target: 5'- cGAGCUCGAgGC-CGGCGG-CGCc--- -3' miRNA: 3'- aUUUGAGCU-CGaGCCGCCuGCGcauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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