miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7678 3' -53.4 NC_001973.1 + 133453 0.66 0.973454
Target:  5'- aGUCGGCGcgcGGGUCGcgcacggagcgccagCGGG--CGAGCa -3'
miRNA:   3'- -CAGCCGUu--CCCAGUa--------------GCCCaaGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 146001 0.66 0.970342
Target:  5'- -cCGGCucGGGgag-CGGGUccgccggcUCGAGCg -3'
miRNA:   3'- caGCCGuuCCCaguaGCCCA--------AGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 146124 0.67 0.960546
Target:  5'- -cCGGCucGGGagCGggcCGGGgUCAAGCg -3'
miRNA:   3'- caGCCGuuCCCa-GUa--GCCCaAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12300 0.67 0.956835
Target:  5'- -cCGGCcAGGGUCaAUCGaGUUCAAa- -3'
miRNA:   3'- caGCCGuUCCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 8171 0.67 0.952893
Target:  5'- cGUCGGC--GGGUCGaCGGa--CGAGCg -3'
miRNA:   3'- -CAGCCGuuCCCAGUaGCCcaaGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 55894 0.68 0.93474
Target:  5'- -gCGGCAGgcucGGGcUCGggcUCGGGcUCGGGCu -3'
miRNA:   3'- caGCCGUU----CCC-AGU---AGCCCaAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 150929 0.68 0.93474
Target:  5'- cGUCcGCcGGGGUCGUUGGaGgucagacUCGAGCu -3'
miRNA:   3'- -CAGcCGuUCCCAGUAGCC-Ca------AGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 127388 0.68 0.929594
Target:  5'- -cCGGCAAGGGgcaAUCGaGUUCAAa- -3'
miRNA:   3'- caGCCGUUCCCag-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 119118 0.68 0.924203
Target:  5'- cGUCGGCcgcgcuGGUCAUCGGGcugUUCGAc- -3'
miRNA:   3'- -CAGCCGuuc---CCAGUAGCCC---AAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 109566 0.68 0.918565
Target:  5'- -cCGGCGcGGGg---CGGGuUUCGGGCg -3'
miRNA:   3'- caGCCGUuCCCaguaGCCC-AAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 160496 0.69 0.906557
Target:  5'- -cCGGCcAGGGUCGaUGGaGgUCGAGCc -3'
miRNA:   3'- caGCCGuUCCCAGUaGCC-CaAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 81850 0.69 0.90019
Target:  5'- gGUCGaC-GGGGUCGUCGGG--CGAGUa -3'
miRNA:   3'- -CAGCcGuUCCCAGUAGCCCaaGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 130727 0.69 0.90019
Target:  5'- cGUCGGCcGGGGcaAUCGaGUUCAAGa -3'
miRNA:   3'- -CAGCCGuUCCCagUAGCcCAAGUUCg -5'
7678 3' -53.4 NC_001973.1 + 72151 0.69 0.90019
Target:  5'- cGUCGGCAAaGGUCgAUCGaGUUCAAa- -3'
miRNA:   3'- -CAGCCGUUcCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 134973 0.7 0.849174
Target:  5'- gGUCGGCGAucgaguacguccGGGcCGUCGGGcgggagcCGGGCa -3'
miRNA:   3'- -CAGCCGUU------------CCCaGUAGCCCaa-----GUUCG- -5'
7678 3' -53.4 NC_001973.1 + 12142 0.72 0.750198
Target:  5'- cGUCuGCcGGGGUCaAUCGaGUUCGAGCc -3'
miRNA:   3'- -CAGcCGuUCCCAG-UAGCcCAAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 129335 0.73 0.68999
Target:  5'- -cCGGCAAGGGUCGauaGaGG-UCAAGCc -3'
miRNA:   3'- caGCCGUUCCCAGUag-C-CCaAGUUCG- -5'
7678 3' -53.4 NC_001973.1 + 130570 0.73 0.68999
Target:  5'- cGUCGGCcGGGGUCgAUCGaGUUCAAa- -3'
miRNA:   3'- -CAGCCGuUCCCAG-UAGCcCAAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 130982 0.74 0.648734
Target:  5'- cGUCGGCGAGGGUCgAUUGGaGgUCAAc- -3'
miRNA:   3'- -CAGCCGUUCCCAG-UAGCC-CaAGUUcg -5'
7678 3' -53.4 NC_001973.1 + 151037 0.74 0.638364
Target:  5'- cUCGGCcgAAGGGUCAUUGcaGGUcagacUCGAGCu -3'
miRNA:   3'- cAGCCG--UUCCCAGUAGC--CCA-----AGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.