miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7679 5' -54.4 NC_001973.1 + 129650 0.66 0.958877
Target:  5'- -uCGCaUCGGCCGGuGGUCGugucgAAAGc -3'
miRNA:   3'- auGCGcAGCCGGUC-CCAGCua---UUUCc -5'
7679 5' -54.4 NC_001973.1 + 70360 0.66 0.958877
Target:  5'- cGgGCGagCGGCCGcuGGGUCGGUAc--- -3'
miRNA:   3'- aUgCGCa-GCCGGU--CCCAGCUAUuucc -5'
7679 5' -54.4 NC_001973.1 + 160724 0.66 0.955106
Target:  5'- uUACGCGcCGGCaAGGGUCaauc-GGGu -3'
miRNA:   3'- -AUGCGCaGCCGgUCCCAGcuauuUCC- -5'
7679 5' -54.4 NC_001973.1 + 56377 0.67 0.942411
Target:  5'- cGCGC-UCGgcGCCAGGcUCGGUAucGGg -3'
miRNA:   3'- aUGCGcAGC--CGGUCCcAGCUAUuuCC- -5'
7679 5' -54.4 NC_001973.1 + 87422 0.67 0.942411
Target:  5'- gACGaUGUCGGCC-GcGUCGAUAGccauGGGg -3'
miRNA:   3'- aUGC-GCAGCCGGuCcCAGCUAUU----UCC- -5'
7679 5' -54.4 NC_001973.1 + 19713 0.67 0.942411
Target:  5'- cUACGCGUCGGCCGGaGcUC--UAGAGu -3'
miRNA:   3'- -AUGCGCAGCCGGUC-CcAGcuAUUUCc -5'
7679 5' -54.4 NC_001973.1 + 1827 0.67 0.937709
Target:  5'- aGCGCGcacaCGGCCAGgcuguggcacaGGUUGGgguUGGAGGg -3'
miRNA:   3'- aUGCGCa---GCCGGUC-----------CCAGCU---AUUUCC- -5'
7679 5' -54.4 NC_001973.1 + 39430 0.68 0.904471
Target:  5'- gGCGCGUCGcGuCCAGGG-CGAc----- -3'
miRNA:   3'- aUGCGCAGC-C-GGUCCCaGCUauuucc -5'
7679 5' -54.4 NC_001973.1 + 41425 0.68 0.884662
Target:  5'- -cCGCGUCGGCCgacAGGcucCGGUGAAGc -3'
miRNA:   3'- auGCGCAGCCGG---UCCca-GCUAUUUCc -5'
7679 5' -54.4 NC_001973.1 + 73662 0.69 0.862837
Target:  5'- gAgGCGcCGGCCcucgaacGGGUCGAacaGAAGGg -3'
miRNA:   3'- aUgCGCaGCCGGu------CCCAGCUa--UUUCC- -5'
7679 5' -54.4 NC_001973.1 + 29052 0.7 0.839133
Target:  5'- aGCGUgcacagauaGUCGGCCAGGGUgGAg----- -3'
miRNA:   3'- aUGCG---------CAGCCGGUCCCAgCUauuucc -5'
7679 5' -54.4 NC_001973.1 + 131770 0.71 0.78684
Target:  5'- cACGCGguugacgacggCGGCC-GGcUCGGUGAAGGg -3'
miRNA:   3'- aUGCGCa----------GCCGGuCCcAGCUAUUUCC- -5'
7679 5' -54.4 NC_001973.1 + 72233 0.73 0.648725
Target:  5'- uUACGUGcCGGCCGGGGUCaAUcGAGu -3'
miRNA:   3'- -AUGCGCaGCCGGUCCCAGcUAuUUCc -5'
7679 5' -54.4 NC_001973.1 + 16463 0.73 0.648725
Target:  5'- uUACGUGcCGGCCGGGGUCaAUcGAGu -3'
miRNA:   3'- -AUGCGCaGCCGGUCCCAGcUAuUUCc -5'
7679 5' -54.4 NC_001973.1 + 129251 0.73 0.638474
Target:  5'- uUACGCGUCGGCaAGGGUCauc--GGGu -3'
miRNA:   3'- -AUGCGCAGCCGgUCCCAGcuauuUCC- -5'
7679 5' -54.4 NC_001973.1 + 131550 0.73 0.638474
Target:  5'- aACGCGUCGGCgAaccGGGacUCGAUGuAAGGc -3'
miRNA:   3'- aUGCGCAGCCGgU---CCC--AGCUAU-UUCC- -5'
7679 5' -54.4 NC_001973.1 + 12372 0.74 0.617963
Target:  5'- uUACGCGUCGGCaAGGGUCaAUcGAGu -3'
miRNA:   3'- -AUGCGCAGCCGgUCCCAGcUAuUUCc -5'
7679 5' -54.4 NC_001973.1 + 12137 0.74 0.607721
Target:  5'- uUACGCGUCuGCCGGGGUCaAUcGAGu -3'
miRNA:   3'- -AUGCGCAGcCGGUCCCAGcUAuUUCc -5'
7679 5' -54.4 NC_001973.1 + 12293 0.75 0.577131
Target:  5'- uUACGUGcCGGCCAGGGUCaAUcGAGu -3'
miRNA:   3'- -AUGCGCaGCCGGUCCCAGcUAuUUCc -5'
7679 5' -54.4 NC_001973.1 + 72146 0.75 0.546895
Target:  5'- uUACGCGUCGGCaaaGGUCGAUcGAGu -3'
miRNA:   3'- -AUGCGCAGCCGgucCCAGCUAuUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.