miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7706 5' -54.4 NC_001973.1 + 132506 0.66 0.955436
Target:  5'- cGGCcaACGCccacagacacGCCAGAUaGAGGccgccgGGCGCGg -3'
miRNA:   3'- -CCG--UGCGa---------CGGUCUA-CUUUa-----CCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 130199 0.66 0.955436
Target:  5'- cGCACGCgGUCGGcgGca--GGCGCa -3'
miRNA:   3'- cCGUGCGaCGGUCuaCuuuaCCGCGc -5'
7706 5' -54.4 NC_001973.1 + 105852 0.66 0.955436
Target:  5'- cGGCgaGCGCUucgagcacGCCcuuGAUGAcGGUGGCGaCGa -3'
miRNA:   3'- -CCG--UGCGA--------CGGu--CUACU-UUACCGC-GC- -5'
7706 5' -54.4 NC_001973.1 + 139040 0.66 0.955436
Target:  5'- -aCGCGCUGCC-GcgGAAGUcGGCGa- -3'
miRNA:   3'- ccGUGCGACGGuCuaCUUUA-CCGCgc -5'
7706 5' -54.4 NC_001973.1 + 140015 0.66 0.951421
Target:  5'- -cUACuGCUGCCAGAgcacGGUGGCGgGc -3'
miRNA:   3'- ccGUG-CGACGGUCUacu-UUACCGCgC- -5'
7706 5' -54.4 NC_001973.1 + 7308 0.66 0.951421
Target:  5'- -cCGCGCUGUCGG-UGAAcguGCGCGg -3'
miRNA:   3'- ccGUGCGACGGUCuACUUuacCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 60423 0.66 0.951421
Target:  5'- gGGCGCGCUcGCUGGAUcagcucGAGccgcagcaguacGUGGaCGCGc -3'
miRNA:   3'- -CCGUGCGA-CGGUCUA------CUU------------UACC-GCGC- -5'
7706 5' -54.4 NC_001973.1 + 94067 0.66 0.947171
Target:  5'- uGGCGCGCUGCCucacgcccGGccUGGAGgccaagGaGCGCa -3'
miRNA:   3'- -CCGUGCGACGGu-------CU--ACUUUa-----C-CGCGc -5'
7706 5' -54.4 NC_001973.1 + 36000 0.66 0.942682
Target:  5'- cGGCAUGCccGCUugguacGUGGAG-GGCGCGg -3'
miRNA:   3'- -CCGUGCGa-CGGuc----UACUUUaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 24162 0.66 0.942682
Target:  5'- cGGCgcugGCGCUGCCGcuGcgGccgcGGCGCGu -3'
miRNA:   3'- -CCG----UGCGACGGU--CuaCuuuaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 121649 0.66 0.937953
Target:  5'- cGCGCGCcGCCuc--GAAG-GGCGCGu -3'
miRNA:   3'- cCGUGCGaCGGucuaCUUUaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 54964 0.67 0.932981
Target:  5'- gGGCACGCcgaugagGCCGGAggcggcGGCgGCGg -3'
miRNA:   3'- -CCGUGCGa------CGGUCUacuuuaCCG-CGC- -5'
7706 5' -54.4 NC_001973.1 + 6212 0.67 0.932981
Target:  5'- cGGCGCGgUGCCGGcgc----GGCGCc -3'
miRNA:   3'- -CCGUGCgACGGUCuacuuuaCCGCGc -5'
7706 5' -54.4 NC_001973.1 + 52855 0.67 0.927765
Target:  5'- cGCGCGCgGCCGGucgGuccagcUGGCGCc -3'
miRNA:   3'- cCGUGCGaCGGUCua-Cuuu---ACCGCGc -5'
7706 5' -54.4 NC_001973.1 + 113586 0.67 0.927765
Target:  5'- cGGUgccgGCGCUGCCGcucacGAAcacgGGCGCGa -3'
miRNA:   3'- -CCG----UGCGACGGUcua--CUUua--CCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 121307 0.67 0.922305
Target:  5'- cGGCGCGC-GCCGGcgGAc---GCGCc -3'
miRNA:   3'- -CCGUGCGaCGGUCuaCUuuacCGCGc -5'
7706 5' -54.4 NC_001973.1 + 63620 0.67 0.921183
Target:  5'- cGCGCGCacggccaaaucgGCCGcGUGggGcGGCGCGc -3'
miRNA:   3'- cCGUGCGa-----------CGGUcUACuuUaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 152409 0.67 0.9166
Target:  5'- cGGCGCGCaaacuuaucGCgCGGAcGggGcGGCGCGc -3'
miRNA:   3'- -CCGUGCGa--------CG-GUCUaCuuUaCCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 132551 0.67 0.9166
Target:  5'- cGGCGgGCUcgaGCgCGGcgGu-GUGGCGCGc -3'
miRNA:   3'- -CCGUgCGA---CG-GUCuaCuuUACCGCGC- -5'
7706 5' -54.4 NC_001973.1 + 46339 0.67 0.910653
Target:  5'- gGGCGCGCUGCUgcuGGUGcuguuuuUGGC-CGa -3'
miRNA:   3'- -CCGUGCGACGGu--CUACuuu----ACCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.