miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7840 5' -55.1 NC_001973.1 + 73155 0.66 0.947573
Target:  5'- --cUCGuCCGCGuccucGUCCGCGUCCuCGu -3'
miRNA:   3'- uuuAGUuGGUGCc----CAGGCGCAGGuGC- -5'
7840 5' -55.1 NC_001973.1 + 133451 0.66 0.93359
Target:  5'- gAAGUCGGCgCGCGGGUC-GCG--CACGg -3'
miRNA:   3'- -UUUAGUUG-GUGCCCAGgCGCagGUGC- -5'
7840 5' -55.1 NC_001973.1 + 18727 0.66 0.93359
Target:  5'- ---cCAACUACuGGUCCGCGgaagagCACGa -3'
miRNA:   3'- uuuaGUUGGUGcCCAGGCGCag----GUGC- -5'
7840 5' -55.1 NC_001973.1 + 8467 0.66 0.928453
Target:  5'- ---cCGACCACGGcaaccccacGUCCGuCGUguaCCGCGa -3'
miRNA:   3'- uuuaGUUGGUGCC---------CAGGC-GCA---GGUGC- -5'
7840 5' -55.1 NC_001973.1 + 84300 0.67 0.911603
Target:  5'- ---aCGGCgCACGG--CCGCGUCCGCc -3'
miRNA:   3'- uuuaGUUG-GUGCCcaGGCGCAGGUGc -5'
7840 5' -55.1 NC_001973.1 + 125426 0.67 0.90551
Target:  5'- -cGUCAuaaaGCGGG-CCGcCGUCCACa -3'
miRNA:   3'- uuUAGUugg-UGCCCaGGC-GCAGGUGc -5'
7840 5' -55.1 NC_001973.1 + 81024 0.67 0.897238
Target:  5'- --cUUGACCgccgacggcgguauGCGGG-CCGCGUCgACGg -3'
miRNA:   3'- uuuAGUUGG--------------UGCCCaGGCGCAGgUGC- -5'
7840 5' -55.1 NC_001973.1 + 143463 0.68 0.885831
Target:  5'- cAGAUCAGCuccUugGGGUaguaCCG-GUCCGCGg -3'
miRNA:   3'- -UUUAGUUG---GugCCCA----GGCgCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 53921 0.68 0.885831
Target:  5'- cGAGUCGccACCACGGuGagCuCGUCCACGu -3'
miRNA:   3'- -UUUAGU--UGGUGCC-CagGcGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 158922 0.68 0.878817
Target:  5'- aAAGUCGcGCCGCGcGcgaccgagccGcCCGCGUCCGCGa -3'
miRNA:   3'- -UUUAGU-UGGUGC-C----------CaGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 18456 0.68 0.871582
Target:  5'- cGAcgCAugGCgACGGGUCCacugaaCGUCCGCGc -3'
miRNA:   3'- -UUuaGU--UGgUGCCCAGGc-----GCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 21267 0.68 0.864132
Target:  5'- cAAAUCgAGCCGCGGcGUCCGCcgggCCGuCGc -3'
miRNA:   3'- -UUUAG-UUGGUGCC-CAGGCGca--GGU-GC- -5'
7840 5' -55.1 NC_001973.1 + 10102 0.68 0.864132
Target:  5'- cGAUCGAgCACGGGUCCa---CCACGc -3'
miRNA:   3'- uUUAGUUgGUGCCCAGGcgcaGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 127876 0.69 0.840548
Target:  5'- uGAGUCAGCgACcGGUCgaugGCGUCCACc -3'
miRNA:   3'- -UUUAGUUGgUGcCCAGg---CGCAGGUGc -5'
7840 5' -55.1 NC_001973.1 + 119312 0.69 0.840548
Target:  5'- --uUCAAgaGCGGGUCgGCGcccgCCGCGa -3'
miRNA:   3'- uuuAGUUggUGCCCAGgCGCa---GGUGC- -5'
7840 5' -55.1 NC_001973.1 + 33326 0.7 0.79755
Target:  5'- ---gCAGCUGCGGGUCacguuGCGgCCGCGg -3'
miRNA:   3'- uuuaGUUGGUGCCCAGg----CGCaGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 81802 0.7 0.79755
Target:  5'- ---aCGGCCGCGGuGUCCGgCG-CCGCc -3'
miRNA:   3'- uuuaGUUGGUGCC-CAGGC-GCaGGUGc -5'
7840 5' -55.1 NC_001973.1 + 83720 0.7 0.769887
Target:  5'- --cUCGAUagagaGCGGcG-CCGCGUCCGCGa -3'
miRNA:   3'- uuuAGUUGg----UGCC-CaGGCGCAGGUGC- -5'
7840 5' -55.1 NC_001973.1 + 128150 0.71 0.701463
Target:  5'- ---aCAGCCGCGGGUCCGagggCUugGu -3'
miRNA:   3'- uuuaGUUGGUGCCCAGGCgca-GGugC- -5'
7840 5' -55.1 NC_001973.1 + 20112 0.72 0.675149
Target:  5'- ---aCAGCCGCGGGUCCGagggcuuggugauuaCGUCUugaGCGa -3'
miRNA:   3'- uuuaGUUGGUGCCCAGGC---------------GCAGG---UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.