miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7841 3' -55.4 NC_001973.1 + 120520 0.66 0.943012
Target:  5'- cGGAcgAGGcu-CGCGaCUauuUGAACGCGCUg -3'
miRNA:   3'- -CCUa-UCCccuGCGC-GA---ACUUGCGCGA- -5'
7841 3' -55.4 NC_001973.1 + 82308 0.66 0.933482
Target:  5'- cGAUGGcaGGugGCGCU--GGCGUGCg -3'
miRNA:   3'- cCUAUCc-CCugCGCGAacUUGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 2885 0.66 0.928362
Target:  5'- ----cGGcGGACGCGCgucguCGCGCUu -3'
miRNA:   3'- ccuauCC-CCUGCGCGaacuuGCGCGA- -5'
7841 3' -55.4 NC_001973.1 + 22414 0.66 0.917409
Target:  5'- gGGAU-GGGGACGaCGCcgc--CGCGCc -3'
miRNA:   3'- -CCUAuCCCCUGC-GCGaacuuGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 40114 0.66 0.917409
Target:  5'- gGGAUaguagcGGGGGugGCGaCUcGu-CGCGCc -3'
miRNA:   3'- -CCUA------UCCCCugCGC-GAaCuuGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 87439 0.66 0.917409
Target:  5'- cGAUAgccauGGGGAUGgGCccGAcgGCGCGCa -3'
miRNA:   3'- cCUAU-----CCCCUGCgCGaaCU--UGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 159061 0.67 0.899208
Target:  5'- cGGAcgcGGaGGACGacucguuGCUgcgGGACGCGCUg -3'
miRNA:   3'- -CCUau-CC-CCUGCg------CGAa--CUUGCGCGA- -5'
7841 3' -55.4 NC_001973.1 + 36565 0.67 0.885918
Target:  5'- uGGuuuuuGGcGGGCGCGU-UGAcgcGCGCGCUg -3'
miRNA:   3'- -CCuau--CC-CCUGCGCGaACU---UGCGCGA- -5'
7841 3' -55.4 NC_001973.1 + 38149 0.67 0.885918
Target:  5'- uGGAUGGGgcccgccgagaGGACGgGCaaGAcuugcACGCGCa -3'
miRNA:   3'- -CCUAUCC-----------CCUGCgCGaaCU-----UGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 152429 0.7 0.78905
Target:  5'- cGGAcGGGGcGGCGCGCagGcuuauCGCGCg -3'
miRNA:   3'- -CCUaUCCC-CUGCGCGaaCuu---GCGCGa -5'
7841 3' -55.4 NC_001973.1 + 123165 0.7 0.78905
Target:  5'- aGGUcGGGuccucgucgccGGCGCGCUccagGAACGCGCa -3'
miRNA:   3'- cCUAuCCC-----------CUGCGCGAa---CUUGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 99451 0.7 0.779874
Target:  5'- cGGAUAGuaGACGCGUUUgGAACGCa-- -3'
miRNA:   3'- -CCUAUCccCUGCGCGAA-CUUGCGcga -5'
7841 3' -55.4 NC_001973.1 + 3557 0.7 0.751593
Target:  5'- aGGUAGccggcGGGGCGCGCgaUGAccgacggcGCGCGCUu -3'
miRNA:   3'- cCUAUC-----CCCUGCGCGa-ACU--------UGCGCGA- -5'
7841 3' -55.4 NC_001973.1 + 54701 0.7 0.749671
Target:  5'- aGGAUGGGGuuccaguacacgaccGugGCGUUgguguucuuuuucgGGACGCGCg -3'
miRNA:   3'- -CCUAUCCC---------------CugCGCGAa-------------CUUGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 110073 0.7 0.741945
Target:  5'- -cGUGGaGGACGCGCUguucGCGCGCg -3'
miRNA:   3'- ccUAUCcCCUGCGCGAacu-UGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 137319 0.71 0.722371
Target:  5'- uGAUAGGcGGGCGgGCgc--GCGCGCg -3'
miRNA:   3'- cCUAUCC-CCUGCgCGaacuUGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 5070 0.71 0.702489
Target:  5'- ---cGGGGGACGCGCgcgGcguUGCGCa -3'
miRNA:   3'- ccuaUCCCCUGCGCGaa-Cuu-GCGCGa -5'
7841 3' -55.4 NC_001973.1 + 136714 0.71 0.692455
Target:  5'- --uUGGGcgaGGAUGCGCgaaagGAGCGCGCg -3'
miRNA:   3'- ccuAUCC---CCUGCGCGaa---CUUGCGCGa -5'
7841 3' -55.4 NC_001973.1 + 133114 0.71 0.692455
Target:  5'- nGGAgAGGaGcGCGCGUUUGAGCGCGg- -3'
miRNA:   3'- -CCUaUCC-CcUGCGCGAACUUGCGCga -5'
7841 3' -55.4 NC_001973.1 + 133092 0.72 0.641709
Target:  5'- --uUGGaGGuGACGCGCUUGGACGUGg- -3'
miRNA:   3'- ccuAUC-CC-CUGCGCGAACUUGCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.