miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
787 3' -52.7 NC_000852.3 + 158660 0.66 0.998201
Target:  5'- gCAGGuuucGGUgcGGGCuucguugcGggUUUAGgGGCGg -3'
miRNA:   3'- gGUCCu---CCA--UCCG--------CuuAAAUCgCCGC- -5'
787 3' -52.7 NC_000852.3 + 210329 0.66 0.998201
Target:  5'- --cGGGGGUGGucaCGG---UAGCGGCGg -3'
miRNA:   3'- gguCCUCCAUCc--GCUuaaAUCGCCGC- -5'
787 3' -52.7 NC_000852.3 + 8319 0.66 0.997872
Target:  5'- gCAGGAGGUguuauagaAGGUaa---UGGCGGUGg -3'
miRNA:   3'- gGUCCUCCA--------UCCGcuuaaAUCGCCGC- -5'
787 3' -52.7 NC_000852.3 + 188263 0.66 0.997495
Target:  5'- cCCAGGAGGUGGGacaaGA--UUAGaaccgucuuuUGGCc -3'
miRNA:   3'- -GGUCCUCCAUCCg---CUuaAAUC----------GCCGc -5'
787 3' -52.7 NC_000852.3 + 24589 0.67 0.995381
Target:  5'- aCGGGcuucGGU--GCGggUUUAGgGGCGg -3'
miRNA:   3'- gGUCCu---CCAucCGCuuAAAUCgCCGC- -5'
787 3' -52.7 NC_000852.3 + 50747 0.68 0.992989
Target:  5'- gCCAuGuGGUGGGaUGAGUUUGaCGGCGa -3'
miRNA:   3'- -GGUcCuCCAUCC-GCUUAAAUcGCCGC- -5'
787 3' -52.7 NC_000852.3 + 90108 0.68 0.992001
Target:  5'- gCAGGAGGUGGuGCuAAgucgaugAGCGGUc -3'
miRNA:   3'- gGUCCUCCAUC-CGcUUaaa----UCGCCGc -5'
787 3' -52.7 NC_000852.3 + 93365 0.68 0.992001
Target:  5'- aCCAGGGGGUGGGau-AUgagGGgGGUu -3'
miRNA:   3'- -GGUCCUCCAUCCgcuUAaa-UCgCCGc -5'
787 3' -52.7 NC_000852.3 + 93464 0.69 0.985303
Target:  5'- uUCAGGAuuGGUAGGaGGAUUUGGUgugggagguuucGGCGu -3'
miRNA:   3'- -GGUCCU--CCAUCCgCUUAAAUCG------------CCGC- -5'
787 3' -52.7 NC_000852.3 + 76502 0.69 0.985303
Target:  5'- gCAGGuuugggagcGGGUuugGGaGCGggUUUAGgGGCGu -3'
miRNA:   3'- gGUCC---------UCCA---UC-CGCuuAAAUCgCCGC- -5'
787 3' -52.7 NC_000852.3 + 116211 0.69 0.981663
Target:  5'- uCCAGGuAGGUuguGGUGGAgUUGGC-GCGa -3'
miRNA:   3'- -GGUCC-UCCAu--CCGCUUaAAUCGcCGC- -5'
787 3' -52.7 NC_000852.3 + 197699 0.7 0.969652
Target:  5'- gCAGGuuucggagcGGGUuucGGuGCGggUUUAGgGGCGg -3'
miRNA:   3'- gGUCC---------UCCA---UC-CGCuuAAAUCgCCGC- -5'
787 3' -52.7 NC_000852.3 + 210487 0.71 0.944674
Target:  5'- -uGGGuGGU-GGCGGAgggGGUGGCGg -3'
miRNA:   3'- ggUCCuCCAuCCGCUUaaaUCGCCGC- -5'
787 3' -52.7 NC_000852.3 + 231775 0.72 0.935606
Target:  5'- aCCAGGuGGUguaggAGGCGGgauggguggaauGUUcGGCGGUGg -3'
miRNA:   3'- -GGUCCuCCA-----UCCGCU------------UAAaUCGCCGC- -5'
787 3' -52.7 NC_000852.3 + 319158 0.73 0.889769
Target:  5'- uCCAGGAucgguguGGUGGGCGAAaacgguGCGGgGa -3'
miRNA:   3'- -GGUCCU-------CCAUCCGCUUaaau--CGCCgC- -5'
787 3' -52.7 NC_000852.3 + 158612 0.75 0.81531
Target:  5'- gCGGGcuucggugcGGGUuuagGGGCGggUUUAGgGGCGg -3'
miRNA:   3'- gGUCC---------UCCA----UCCGCuuAAAUCgCCGC- -5'
787 3' -52.7 NC_000852.3 + 188785 0.81 0.538601
Target:  5'- gUAGGAGGUuugGGaGCGggUUUAGgGGCGg -3'
miRNA:   3'- gGUCCUCCA---UC-CGCuuAAAUCgCCGC- -5'
787 3' -52.7 NC_000852.3 + 319972 1.11 0.010073
Target:  5'- aCCAGGAGGUAGGCGAAUUUAGCGGCGu -3'
miRNA:   3'- -GGUCCUCCAUCCGCUUAAAUCGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.