miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7901 3' -58.8 NC_001973.1 + 89584 0.66 0.811444
Target:  5'- cGGUuCAGcGGCgUGGUCGCCAcguacACGUGg -3'
miRNA:   3'- uCCAcGUC-CUGaACCGGCGGU-----UGCGC- -5'
7901 3' -58.8 NC_001973.1 + 95852 0.66 0.811444
Target:  5'- cGGUGCcgggcacgugggAGGACggcgUGGUCGaCUAcCGCGa -3'
miRNA:   3'- uCCACG------------UCCUGa---ACCGGC-GGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 81618 0.66 0.802761
Target:  5'- cAGGUcguaGCGGGcgauCUUGGUCGC--GCGCGc -3'
miRNA:   3'- -UCCA----CGUCCu---GAACCGGCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 81101 0.66 0.800127
Target:  5'- uGGGcGCGGGcucguugaaggcgcGCUUGcGCC-CCGACGUGa -3'
miRNA:   3'- -UCCaCGUCC--------------UGAAC-CGGcGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 100780 0.66 0.79393
Target:  5'- gAGG-GCAGcGCgcacacgUGGCCaGCgGGCGCGa -3'
miRNA:   3'- -UCCaCGUCcUGa------ACCGG-CGgUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 44714 0.66 0.79393
Target:  5'- aAGGUGCcGGGCaaGGUgaaCGUguACGCGg -3'
miRNA:   3'- -UCCACGuCCUGaaCCG---GCGguUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 69692 0.66 0.78586
Target:  5'- -cGUGCAG-ACggucgaugcauucgaUGGCCGCCAcCGCGu -3'
miRNA:   3'- ucCACGUCcUGa--------------ACCGGCGGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 101964 0.66 0.784957
Target:  5'- uGGUgGCGGcGACgauGCgCGCCAGCGUGu -3'
miRNA:   3'- uCCA-CGUC-CUGaacCG-GCGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 62310 0.66 0.784957
Target:  5'- -cGUGCAGGGCUacuUGGaaGCguaccaAACGCGg -3'
miRNA:   3'- ucCACGUCCUGA---ACCggCGg-----UUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 3050 0.66 0.775851
Target:  5'- uGGGUGCgcauuAGcGCUUGGCUGUCGggcaGCGCc -3'
miRNA:   3'- -UCCACG-----UCcUGAACCGGCGGU----UGCGc -5'
7901 3' -58.8 NC_001973.1 + 102716 0.66 0.775851
Target:  5'- cGGU-CAaGAUUuucgUGGCCGCCAGuCGCGa -3'
miRNA:   3'- uCCAcGUcCUGA----ACCGGCGGUU-GCGC- -5'
7901 3' -58.8 NC_001973.1 + 80995 0.67 0.766621
Target:  5'- uAGGUGCacgauugccGGGucgagcacaGCUUGaCCGCCGACgGCGg -3'
miRNA:   3'- -UCCACG---------UCC---------UGAACcGGCGGUUG-CGC- -5'
7901 3' -58.8 NC_001973.1 + 104155 0.67 0.728633
Target:  5'- gAGGcGguGGAUcgGGCCGgCCGaaaACGCa -3'
miRNA:   3'- -UCCaCguCCUGaaCCGGC-GGU---UGCGc -5'
7901 3' -58.8 NC_001973.1 + 124767 0.68 0.703214
Target:  5'- cGGUGCGcgcgcgcucuguucGACUaucUGGCCGCCGGCGa- -3'
miRNA:   3'- uCCACGUc-------------CUGA---ACCGGCGGUUGCgc -5'
7901 3' -58.8 NC_001973.1 + 89287 0.68 0.699264
Target:  5'- -cGUGCAuGACUgacGGCCGC-GACGCGc -3'
miRNA:   3'- ucCACGUcCUGAa--CCGGCGgUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 85734 0.68 0.689354
Target:  5'- cGGcGUuGGAgUUGGUCGCCGcCGCGc -3'
miRNA:   3'- uCCaCGuCCUgAACCGGCGGUuGCGC- -5'
7901 3' -58.8 NC_001973.1 + 102169 0.68 0.669405
Target:  5'- cAGGUcgaaccucGUGGGGCUuuUGGgCGCgAACGCGa -3'
miRNA:   3'- -UCCA--------CGUCCUGA--ACCgGCGgUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 131483 0.68 0.669405
Target:  5'- gAGGUGgAGGuCggcgGGcCCGCC-GCGCGc -3'
miRNA:   3'- -UCCACgUCCuGaa--CC-GGCGGuUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 5151 0.68 0.669405
Target:  5'- uGGUGCAGGcccaGCUgguUGGUguCCGGCGCGa -3'
miRNA:   3'- uCCACGUCC----UGA---ACCGgcGGUUGCGC- -5'
7901 3' -58.8 NC_001973.1 + 50183 0.69 0.649338
Target:  5'- uGGcGUGCAcGACUUgcucGGCCGUguACGCGu -3'
miRNA:   3'- -UC-CACGUcCUGAA----CCGGCGguUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.