miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7911 5' -58.7 NC_001973.1 + 54807 0.66 0.840358
Target:  5'- cGGGCaGCuuGGACGCGUCCAcGUAucgaauguccucguCGGUg -3'
miRNA:   3'- -UCCGcCG--CUUGCGCAGGU-CGUu-------------GCCG- -5'
7911 5' -58.7 NC_001973.1 + 4348 0.66 0.837166
Target:  5'- cGGCGGCcguGAuCGUauaUCCAcGCGGCGGUc -3'
miRNA:   3'- uCCGCCG---CUuGCGc--AGGU-CGUUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 16008 0.66 0.837166
Target:  5'- cGGaCGacCGAugGCG-CCAGCu-CGGCg -3'
miRNA:   3'- uCC-GCc-GCUugCGCaGGUCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 34632 0.66 0.837166
Target:  5'- uGGGCuGGUaguaGAagcccgACGUGUgCGGCAGCGGg -3'
miRNA:   3'- -UCCG-CCG----CU------UGCGCAgGUCGUUGCCg -5'
7911 5' -58.7 NC_001973.1 + 6420 0.66 0.837166
Target:  5'- cGGCGGCG-GCGCG-CCGaCgAGCGcGCc -3'
miRNA:   3'- uCCGCCGCuUGCGCaGGUcG-UUGC-CG- -5'
7911 5' -58.7 NC_001973.1 + 13296 0.66 0.837166
Target:  5'- aAGGUGGUGGacuugucggaacGCGCgGUgCAGUAccCGGCg -3'
miRNA:   3'- -UCCGCCGCU------------UGCG-CAgGUCGUu-GCCG- -5'
7911 5' -58.7 NC_001973.1 + 25807 0.66 0.837166
Target:  5'- cGGCGcGCGGcacaccacGCaaGCGUCCaccaugucGGCGcACGGCg -3'
miRNA:   3'- uCCGC-CGCU--------UG--CGCAGG--------UCGU-UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 102813 0.66 0.837166
Target:  5'- aAGGcCGGCGucauGGCGCG-CC-GCAACGacaGCa -3'
miRNA:   3'- -UCC-GCCGC----UUGCGCaGGuCGUUGC---CG- -5'
7911 5' -58.7 NC_001973.1 + 28667 0.66 0.829061
Target:  5'- cGGCGuCGAGCGCGcugCCAaaguCGGCg -3'
miRNA:   3'- uCCGCcGCUUGCGCa--GGUcguuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 35048 0.66 0.829061
Target:  5'- gAGGCGGCGcaguuCGauuUCC-GCcGCGGCg -3'
miRNA:   3'- -UCCGCCGCuu---GCgc-AGGuCGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 39790 0.66 0.829061
Target:  5'- -cGCGGCGcGACuCGUCCaagaaucgGGCcACGGCc -3'
miRNA:   3'- ucCGCCGC-UUGcGCAGG--------UCGuUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 61822 0.66 0.829061
Target:  5'- uGGCGGcCGGgauguACGCGUaCAGCGAaugaaacaagUGGCc -3'
miRNA:   3'- uCCGCC-GCU-----UGCGCAgGUCGUU----------GCCG- -5'
7911 5' -58.7 NC_001973.1 + 89624 0.66 0.829061
Target:  5'- cGuGCGGCuucGCGCGUugguuuuuuuUCAGCGuCGGCa -3'
miRNA:   3'- uC-CGCCGcu-UGCGCA----------GGUCGUuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 158689 0.66 0.829061
Target:  5'- cGGCGGcCGAGCGCGcgCCuacCGACGc- -3'
miRNA:   3'- uCCGCC-GCUUGCGCa-GGuc-GUUGCcg -5'
7911 5' -58.7 NC_001973.1 + 21545 0.66 0.829061
Target:  5'- cGGCGuCGGGCGCG-CCguGGUccCGGCg -3'
miRNA:   3'- uCCGCcGCUUGCGCaGG--UCGuuGCCG- -5'
7911 5' -58.7 NC_001973.1 + 69933 0.66 0.828241
Target:  5'- cGGCGcGUGAgcaggccccugccGCGCaugccGUCCAGUuuGAUGGCc -3'
miRNA:   3'- uCCGC-CGCU-------------UGCG-----CAGGUCG--UUGCCG- -5'
7911 5' -58.7 NC_001973.1 + 87075 0.66 0.82742
Target:  5'- cGGCcGCGcAACGUGUgcuuucugccgugCCGGCAcgugugcgcgugcGCGGCg -3'
miRNA:   3'- uCCGcCGC-UUGCGCA-------------GGUCGU-------------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 40126 0.66 0.820786
Target:  5'- gGGGUGGCGAcucguCGCGcCCaucgucucaaAGUucuCGGCg -3'
miRNA:   3'- -UCCGCCGCUu----GCGCaGG----------UCGuu-GCCG- -5'
7911 5' -58.7 NC_001973.1 + 88961 0.66 0.820786
Target:  5'- cGGCaGUGccGCuCGUCCAGCAcgcagucgACGGCc -3'
miRNA:   3'- uCCGcCGCu-UGcGCAGGUCGU--------UGCCG- -5'
7911 5' -58.7 NC_001973.1 + 75576 0.66 0.81995
Target:  5'- cGGGCGgaGCGGACggagcggGCGgagCgGGCGgaGCGGCa -3'
miRNA:   3'- -UCCGC--CGCUUG-------CGCa--GgUCGU--UGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.