miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 3' -60.3 NC_001973.1 + 110355 0.66 0.78215
Target:  5'- cGCCGC--CUCGGCgGcCGCGUcGGAc -3'
miRNA:   3'- aCGGCGcuGGGCCGgCuGCGCAuUCU- -5'
7967 3' -60.3 NC_001973.1 + 35069 0.66 0.78215
Target:  5'- cGCCGCGGC---GCCGACGUG-AAGc -3'
miRNA:   3'- aCGGCGCUGggcCGGCUGCGCaUUCu -5'
7967 3' -60.3 NC_001973.1 + 21274 0.66 0.773207
Target:  5'- aGCCGCGgcguccGCCgGGCCGuCGCu----- -3'
miRNA:   3'- aCGGCGC------UGGgCCGGCuGCGcauucu -5'
7967 3' -60.3 NC_001973.1 + 67619 0.66 0.773207
Target:  5'- aGCUG-GugCCGGCCG-CGUccGAGAg -3'
miRNA:   3'- aCGGCgCugGGCCGGCuGCGcaUUCU- -5'
7967 3' -60.3 NC_001973.1 + 136581 0.66 0.764147
Target:  5'- cGCUGCG-CgCCGGCgCGACGCu----- -3'
miRNA:   3'- aCGGCGCuG-GGCCG-GCUGCGcauucu -5'
7967 3' -60.3 NC_001973.1 + 23001 0.66 0.764147
Target:  5'- cGCCGaCGugCaaaagaucuUGGCCGACGUGguguGGGc -3'
miRNA:   3'- aCGGC-GCugG---------GCCGGCUGCGCau--UCU- -5'
7967 3' -60.3 NC_001973.1 + 25013 0.66 0.764147
Target:  5'- aGCgaCGCGACUCGGCUuGCGCGc---- -3'
miRNA:   3'- aCG--GCGCUGGGCCGGcUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 69903 0.66 0.754979
Target:  5'- aUGUCGUccaugaacacGACCaGGCCGccgcgGCGCGUGAGc -3'
miRNA:   3'- -ACGGCG----------CUGGgCCGGC-----UGCGCAUUCu -5'
7967 3' -60.3 NC_001973.1 + 126039 0.66 0.754979
Target:  5'- gGuuGaauuugaGCUCuGCCGACGCGUAAGAc -3'
miRNA:   3'- aCggCgc-----UGGGcCGGCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 96033 0.66 0.754979
Target:  5'- cGCgCGCGAgCUCgGGCUGGgcggucuguuCGCGUGGGAg -3'
miRNA:   3'- aCG-GCGCU-GGG-CCGGCU----------GCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 104274 0.66 0.754979
Target:  5'- cGCCGCcGCCgGGCUGGuCGUGUc--- -3'
miRNA:   3'- aCGGCGcUGGgCCGGCU-GCGCAuucu -5'
7967 3' -60.3 NC_001973.1 + 158402 0.66 0.74571
Target:  5'- cGcCCGCG-CCCGaGCCGACuCGacAAGAa -3'
miRNA:   3'- aC-GGCGCuGGGC-CGGCUGcGCa-UUCU- -5'
7967 3' -60.3 NC_001973.1 + 84147 0.66 0.74571
Target:  5'- aGUCGCGcaACUCgaGGCCGAgGCG-GAGAg -3'
miRNA:   3'- aCGGCGC--UGGG--CCGGCUgCGCaUUCU- -5'
7967 3' -60.3 NC_001973.1 + 53880 0.66 0.74571
Target:  5'- cGCgGCGGCCgUGGCCGcauCGUuaGAGAa -3'
miRNA:   3'- aCGgCGCUGG-GCCGGCu--GCGcaUUCU- -5'
7967 3' -60.3 NC_001973.1 + 28282 0.66 0.73635
Target:  5'- cGCCGCG-CCucguggCGGCCGAgcgcCGCGUcGGc -3'
miRNA:   3'- aCGGCGCuGG------GCCGGCU----GCGCAuUCu -5'
7967 3' -60.3 NC_001973.1 + 81768 0.66 0.73635
Target:  5'- gGCCGCGAUcaugUCGcGCuCGGCGCGaAAGu -3'
miRNA:   3'- aCGGCGCUG----GGC-CG-GCUGCGCaUUCu -5'
7967 3' -60.3 NC_001973.1 + 59929 0.66 0.726905
Target:  5'- cGCCGCGGCgCCGcaGCgCGACGUGc---- -3'
miRNA:   3'- aCGGCGCUG-GGC--CG-GCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 124000 0.66 0.726905
Target:  5'- cGUCGCGGCCugaccaguCGGgCGACGCGcgcgcacGGGAa -3'
miRNA:   3'- aCGGCGCUGG--------GCCgGCUGCGCa------UUCU- -5'
7967 3' -60.3 NC_001973.1 + 159046 0.67 0.707798
Target:  5'- cGUCGuCGAgCUGGUCGgACGCGgaGGAc -3'
miRNA:   3'- aCGGC-GCUgGGCCGGC-UGCGCauUCU- -5'
7967 3' -60.3 NC_001973.1 + 40830 0.67 0.707798
Target:  5'- gUGaCCuccauCGACCCuaGCCGACGCGUAAa- -3'
miRNA:   3'- -AC-GGc----GCUGGGc-CGGCUGCGCAUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.