miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 3' -60.3 NC_001973.1 + 159046 0.67 0.707798
Target:  5'- cGUCGuCGAgCUGGUCGgACGCGgaGGAc -3'
miRNA:   3'- aCGGC-GCUgGGCCGGC-UGCGCauUCU- -5'
7967 3' -60.3 NC_001973.1 + 158374 0.67 0.707798
Target:  5'- -cCCGCG-CCCGcGCCGACuCGUccGAu -3'
miRNA:   3'- acGGCGCuGGGC-CGGCUGcGCAuuCU- -5'
7967 3' -60.3 NC_001973.1 + 41777 0.67 0.698151
Target:  5'- aGCCGCuGCCCgagaacGGCgGGCGCGaguGGGu -3'
miRNA:   3'- aCGGCGcUGGG------CCGgCUGCGCau-UCU- -5'
7967 3' -60.3 NC_001973.1 + 55434 0.67 0.698151
Target:  5'- gGCgGCgGGCCCGa-CGGCGCGgcGGAu -3'
miRNA:   3'- aCGgCG-CUGGGCcgGCUGCGCauUCU- -5'
7967 3' -60.3 NC_001973.1 + 57214 0.67 0.688453
Target:  5'- gGCCGuCGACgaCGucgaggucGCCGACGCGgaGGAc -3'
miRNA:   3'- aCGGC-GCUGg-GC--------CGGCUGCGCauUCU- -5'
7967 3' -60.3 NC_001973.1 + 8095 0.67 0.688453
Target:  5'- cGCUGaCGGCgagcaCCGGCCGGCuCGUGcAGAu -3'
miRNA:   3'- aCGGC-GCUG-----GGCCGGCUGcGCAU-UCU- -5'
7967 3' -60.3 NC_001973.1 + 25719 0.67 0.678712
Target:  5'- uUGCgCGCcGCCCGcgccGCCGGCGCGg---- -3'
miRNA:   3'- -ACG-GCGcUGGGC----CGGCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 104747 0.67 0.678712
Target:  5'- cGUCGCGcACUCGGCgGACGCc----- -3'
miRNA:   3'- aCGGCGC-UGGGCCGgCUGCGcauucu -5'
7967 3' -60.3 NC_001973.1 + 121301 0.67 0.678712
Target:  5'- cGcCCGCGGCgcgcgCCGGCgGACGCGc---- -3'
miRNA:   3'- aC-GGCGCUG-----GGCCGgCUGCGCauucu -5'
7967 3' -60.3 NC_001973.1 + 21557 0.67 0.678712
Target:  5'- cGCCGUGGuCCCGGC--GCGCGggguuGAa -3'
miRNA:   3'- aCGGCGCU-GGGCCGgcUGCGCauu--CU- -5'
7967 3' -60.3 NC_001973.1 + 96759 0.67 0.678712
Target:  5'- cGCCgGCGAgUCGGgCGGCGUGgcGGc -3'
miRNA:   3'- aCGG-CGCUgGGCCgGCUGCGCauUCu -5'
7967 3' -60.3 NC_001973.1 + 146109 0.67 0.668935
Target:  5'- gGCCGCGGCgCUGaGCCGGCuCGgGAGc -3'
miRNA:   3'- aCGGCGCUG-GGC-CGGCUGcGCaUUCu -5'
7967 3' -60.3 NC_001973.1 + 126093 0.67 0.668935
Target:  5'- aGCC-CGAgagCGuGCCGACGCGUGAGc -3'
miRNA:   3'- aCGGcGCUgg-GC-CGGCUGCGCAUUCu -5'
7967 3' -60.3 NC_001973.1 + 2965 0.68 0.663056
Target:  5'- cGaCgGCGACCaGGCucaacacgcuccaccCGGCGCGUAAGGc -3'
miRNA:   3'- aC-GgCGCUGGgCCG---------------GCUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 59978 0.68 0.659131
Target:  5'- aGCCGCcgggcccaGACCgCGGCCGGCGaccccCGUcuGAu -3'
miRNA:   3'- aCGGCG--------CUGG-GCCGGCUGC-----GCAuuCU- -5'
7967 3' -60.3 NC_001973.1 + 21494 0.68 0.659131
Target:  5'- cGUCGCGGCCC-GCCGACuCG-AGGu -3'
miRNA:   3'- aCGGCGCUGGGcCGGCUGcGCaUUCu -5'
7967 3' -60.3 NC_001973.1 + 158626 0.68 0.659131
Target:  5'- uUGCCGCcGCCCGGCgcgccCGACGaccCGUucggcGAGAu -3'
miRNA:   3'- -ACGGCGcUGGGCCG-----GCUGC---GCA-----UUCU- -5'
7967 3' -60.3 NC_001973.1 + 153550 0.68 0.649307
Target:  5'- aGCCGCGACCCccaaCCGAUGCu----- -3'
miRNA:   3'- aCGGCGCUGGGcc--GGCUGCGcauucu -5'
7967 3' -60.3 NC_001973.1 + 128971 0.68 0.649307
Target:  5'- aUGCUcaaacuCGAgCUCGGCCaACGCGUAGGAu -3'
miRNA:   3'- -ACGGc-----GCU-GGGCCGGcUGCGCAUUCU- -5'
7967 3' -60.3 NC_001973.1 + 23087 0.68 0.649307
Target:  5'- cGCUGCG-CUCGGCCGaagaGCGCGccGAGc -3'
miRNA:   3'- aCGGCGCuGGGCCGGC----UGCGCa-UUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.