miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 5' -56.6 NC_001973.1 + 146016 0.66 0.895951
Target:  5'- gGUCCGCCG-GCUCGaGcgcGGGUcgacgGACg -3'
miRNA:   3'- -CAGGCGGCuCGAGC-Caa-UCCGua---CUG- -5'
7967 5' -56.6 NC_001973.1 + 38158 0.66 0.88929
Target:  5'- -cCCGCCGAGa--GGacGGGCAaGACu -3'
miRNA:   3'- caGGCGGCUCgagCCaaUCCGUaCUG- -5'
7967 5' -56.6 NC_001973.1 + 29971 0.66 0.86797
Target:  5'- --aCGCCG-GCUCGGUggUGGGCGc--- -3'
miRNA:   3'- cagGCGGCuCGAGCCA--AUCCGUacug -5'
7967 5' -56.6 NC_001973.1 + 34955 0.66 0.86797
Target:  5'- -aCCGCCGAGCUgaacgcgcucaCGGacgAGGUGUG-Cg -3'
miRNA:   3'- caGGCGGCUCGA-----------GCCaa-UCCGUACuG- -5'
7967 5' -56.6 NC_001973.1 + 132537 0.66 0.858132
Target:  5'- -gCCGCCGGGCgcggCGGc-GGGCucgagcgcggcgguGUGGCg -3'
miRNA:   3'- caGGCGGCUCGa---GCCaaUCCG--------------UACUG- -5'
7967 5' -56.6 NC_001973.1 + 131786 0.67 0.85269
Target:  5'- -gCgGCCG-GCUCGGUgaagGGGCcgucGACg -3'
miRNA:   3'- caGgCGGCuCGAGCCAa---UCCGua--CUG- -5'
7967 5' -56.6 NC_001973.1 + 118428 0.67 0.828292
Target:  5'- -gCCGCCGGGCUCGacgAGcGCAagcgcgacaaaUGGCg -3'
miRNA:   3'- caGGCGGCUCGAGCcaaUC-CGU-----------ACUG- -5'
7967 5' -56.6 NC_001973.1 + 56445 0.67 0.828292
Target:  5'- --gCGCCaAGCUCGGgcgGGGCG-GGCu -3'
miRNA:   3'- cagGCGGcUCGAGCCaa-UCCGUaCUG- -5'
7967 5' -56.6 NC_001973.1 + 56472 0.67 0.828292
Target:  5'- --gCGCCaAGCUCGGgcgGGGCG-GGCu -3'
miRNA:   3'- cagGCGGcUCGAGCCaa-UCCGUaCUG- -5'
7967 5' -56.6 NC_001973.1 + 56499 0.67 0.828292
Target:  5'- --gCGCCaAGCUCGGgcgGGGCG-GGCu -3'
miRNA:   3'- cagGCGGcUCGAGCCaa-UCCGUaCUG- -5'
7967 5' -56.6 NC_001973.1 + 56526 0.67 0.828292
Target:  5'- --gCGCCaAGCUCGGgcgGGGCG-GGCu -3'
miRNA:   3'- cagGCGGcUCGAGCCaa-UCCGUaCUG- -5'
7967 5' -56.6 NC_001973.1 + 96760 0.67 0.819793
Target:  5'- -gCCGgCGAG-UCGGgc-GGCGUGGCg -3'
miRNA:   3'- caGGCgGCUCgAGCCaauCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 4871 0.67 0.819793
Target:  5'- uUCCGCCGuGCUCGuacaaGGGCAgcGCg -3'
miRNA:   3'- cAGGCGGCuCGAGCcaa--UCCGUacUG- -5'
7967 5' -56.6 NC_001973.1 + 115054 0.68 0.8014
Target:  5'- cGUCCGCCGAGCUCGagcaaacccgauuccGGCcucGGCg -3'
miRNA:   3'- -CAGGCGGCUCGAGCcaau-----------CCGua-CUG- -5'
7967 5' -56.6 NC_001973.1 + 150929 0.68 0.793307
Target:  5'- cGUCCGCCGGGgUCGuuggAGGUcaGACu -3'
miRNA:   3'- -CAGGCGGCUCgAGCcaa-UCCGuaCUG- -5'
7967 5' -56.6 NC_001973.1 + 23720 0.69 0.736659
Target:  5'- -gCCGCUGGGCUCGcugacGGGCccGACg -3'
miRNA:   3'- caGGCGGCUCGAGCcaa--UCCGuaCUG- -5'
7967 5' -56.6 NC_001973.1 + 56553 0.69 0.736659
Target:  5'- --gCGCCGAGCUCGauaucGGGCucuAUGACg -3'
miRNA:   3'- cagGCGGCUCGAGCcaa--UCCG---UACUG- -5'
7967 5' -56.6 NC_001973.1 + 40753 0.69 0.726846
Target:  5'- -gCCGCgGAcgcgcugcccGCUCGcuUUAGGCGUGACa -3'
miRNA:   3'- caGGCGgCU----------CGAGCc-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 53871 0.69 0.706985
Target:  5'- -gCCGCCGAGCgCGGc--GGcCGUGGCc -3'
miRNA:   3'- caGGCGGCUCGaGCCaauCC-GUACUG- -5'
7967 5' -56.6 NC_001973.1 + 71774 0.7 0.68687
Target:  5'- -gCCGCCGAGCUCG---AGGCcgGcgGCg -3'
miRNA:   3'- caGGCGGCUCGAGCcaaUCCGuaC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.