miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7967 5' -56.6 NC_001973.1 + 114996 0.93 0.029963
Target:  5'- cGUCCGCCGAGCUCGaGuUUGGGCAUGAUg -3'
miRNA:   3'- -CAGGCGGCUCGAGC-C-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 40870 0.92 0.032526
Target:  5'- cGUCCGCCGAGCUCGaGuUUAGGCAUGAUc -3'
miRNA:   3'- -CAGGCGGCUCGAGC-C-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 40948 0.92 0.032526
Target:  5'- cGUCCGCCGAGCUCGaGuUUAGGCAUGAUc -3'
miRNA:   3'- -CAGGCGGCUCGAGC-C-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 114840 0.92 0.035305
Target:  5'- cGUCCGCCGAGCUCGaGuUUGGGCAUGAUc -3'
miRNA:   3'- -CAGGCGGCUCGAGC-C-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 41027 0.89 0.053081
Target:  5'- cGUCCGCCGAGCUCaGUUugGGGCAUGAUc -3'
miRNA:   3'- -CAGGCGGCUCGAGcCAA--UCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 114688 0.86 0.086035
Target:  5'- -cCCGCCGAGCUCGaGuUUGGGCGUGAUg -3'
miRNA:   3'- caGGCGGCUCGAGC-C-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 114608 0.86 0.086035
Target:  5'- cGUCCGCCGAGCUCaaGUUaAGGCAUGAUg -3'
miRNA:   3'- -CAGGCGGCUCGAGc-CAA-UCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 114918 0.82 0.156771
Target:  5'- cGUCCaCCGAGCUCGaGuUUGGGCAUGAUg -3'
miRNA:   3'- -CAGGcGGCUCGAGC-C-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 114764 0.78 0.289426
Target:  5'- cGUCCG-CGAGCUCaGuUUAGGCGUGAUg -3'
miRNA:   3'- -CAGGCgGCUCGAGcC-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 41106 0.75 0.379353
Target:  5'- cGUCCGCCGAGCUCGaGUUuGGuCAUuuaguugucGGCg -3'
miRNA:   3'- -CAGGCGGCUCGAGC-CAAuCC-GUA---------CUG- -5'
7967 5' -56.6 NC_001973.1 + 56410 0.72 0.584931
Target:  5'- ---aGCCGAGCUCGGUaucGGGCucggGGCu -3'
miRNA:   3'- caggCGGCUCGAGCCAa--UCCGua--CUG- -5'
7967 5' -56.6 NC_001973.1 + 20080 0.71 0.595094
Target:  5'- -cCCGCCGAGCgagcacaCGGccAGGCuGUGGCa -3'
miRNA:   3'- caGGCGGCUCGa------GCCaaUCCG-UACUG- -5'
7967 5' -56.6 NC_001973.1 + 1820 0.71 0.595094
Target:  5'- -cCCGCCGAGCgcgcacaCGGccAGGCuGUGGCa -3'
miRNA:   3'- caGGCGGCUCGa------GCCaaUCCG-UACUG- -5'
7967 5' -56.6 NC_001973.1 + 128118 0.71 0.595094
Target:  5'- -cCCGCCGAGCgagcacaCGGccAGGCuGUGGCa -3'
miRNA:   3'- caGGCGGCUCGa------GCCaaUCCG-UACUG- -5'
7967 5' -56.6 NC_001973.1 + 146072 0.71 0.646168
Target:  5'- --gCGCCGAgccgGCUCGGgcGGGCGggGACu -3'
miRNA:   3'- cagGCGGCU----CGAGCCaaUCCGUa-CUG- -5'
7967 5' -56.6 NC_001973.1 + 5437 0.7 0.656381
Target:  5'- cGUCCaaggaGCCGAGCUCGGgca-GCA-GACa -3'
miRNA:   3'- -CAGG-----CGGCUCGAGCCaaucCGUaCUG- -5'
7967 5' -56.6 NC_001973.1 + 71774 0.7 0.68687
Target:  5'- -gCCGCCGAGCUCG---AGGCcgGcgGCg -3'
miRNA:   3'- caGGCGGCUCGAGCcaaUCCGuaC--UG- -5'
7967 5' -56.6 NC_001973.1 + 53871 0.69 0.706985
Target:  5'- -gCCGCCGAGCgCGGc--GGcCGUGGCc -3'
miRNA:   3'- caGGCGGCUCGaGCCaauCC-GUACUG- -5'
7967 5' -56.6 NC_001973.1 + 40753 0.69 0.726846
Target:  5'- -gCCGCgGAcgcgcugcccGCUCGcuUUAGGCGUGACa -3'
miRNA:   3'- caGGCGgCU----------CGAGCc-AAUCCGUACUG- -5'
7967 5' -56.6 NC_001973.1 + 56553 0.69 0.736659
Target:  5'- --gCGCCGAGCUCGauaucGGGCucuAUGACg -3'
miRNA:   3'- cagGCGGCUCGAGCcaa--UCCG---UACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.