miRNA display CGI


Results 1 - 20 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8016 3' -63.1 NC_001973.1 + 108077 0.66 0.640808
Target:  5'- cUCGCuuAUCG-CGCC-CCGCGCgcaGCg -3'
miRNA:   3'- cAGCGcgUAGCgGCGGuGGCGCGg--CG- -5'
8016 3' -63.1 NC_001973.1 + 23217 0.66 0.640808
Target:  5'- -gCGCGCAguggCGCaggGCC-UgGCGCUGCu -3'
miRNA:   3'- caGCGCGUa---GCGg--CGGuGgCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 85735 0.66 0.640808
Target:  5'- --gGCGUuggaguUgGUCGCCGCCGCGCUc- -3'
miRNA:   3'- cagCGCGu-----AgCGGCGGUGGCGCGGcg -5'
8016 3' -63.1 NC_001973.1 + 50297 0.66 0.640808
Target:  5'- --gGCGC-UUGCCGuUCACCGUG-CGCu -3'
miRNA:   3'- cagCGCGuAGCGGC-GGUGGCGCgGCG- -5'
8016 3' -63.1 NC_001973.1 + 91991 0.66 0.640808
Target:  5'- uGUCGUGUugCGCUuCCGCCaGCuugGCCGCa -3'
miRNA:   3'- -CAGCGCGuaGCGGcGGUGG-CG---CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 123238 0.66 0.640808
Target:  5'- cUCG-GCGUC-CCGCCGuuGCGUCa- -3'
miRNA:   3'- cAGCgCGUAGcGGCGGUggCGCGGcg -5'
8016 3' -63.1 NC_001973.1 + 65564 0.66 0.640808
Target:  5'- cGUCGCGCG-CGCUGCgcgaGCuCGUcugGUCGCu -3'
miRNA:   3'- -CAGCGCGUaGCGGCGg---UG-GCG---CGGCG- -5'
8016 3' -63.1 NC_001973.1 + 58441 0.66 0.639839
Target:  5'- cUCGC-CGUCGCCcugcguGCCcgaaauaGCCGC-CCGCu -3'
miRNA:   3'- cAGCGcGUAGCGG------CGG-------UGGCGcGGCG- -5'
8016 3' -63.1 NC_001973.1 + 17418 0.66 0.639839
Target:  5'- gGUCGCgaaGCAgugagcgaacagcUCGuuGCCGCCGaacgGCgGCa -3'
miRNA:   3'- -CAGCG---CGU-------------AGCggCGGUGGCg---CGgCG- -5'
8016 3' -63.1 NC_001973.1 + 83690 0.66 0.634991
Target:  5'- cUCGCGCAgagUCGCgaccaaaguuuggaGCUcgauagagaGCgGCGCCGCg -3'
miRNA:   3'- cAGCGCGU---AGCGg-------------CGG---------UGgCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 24311 0.66 0.631112
Target:  5'- -gCGCGCGUCGaCGCCGaagagGUGCUGUu -3'
miRNA:   3'- caGCGCGUAGCgGCGGUgg---CGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 59068 0.66 0.631112
Target:  5'- -gUGCGCAacgugUGCCGCU-UCGUGCUGCc -3'
miRNA:   3'- caGCGCGUa----GCGGCGGuGGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 62712 0.66 0.631112
Target:  5'- cGUCGCGaaaaacUUGCCcaaGUCGCCGCGCguCGUg -3'
miRNA:   3'- -CAGCGCgu----AGCGG---CGGUGGCGCG--GCG- -5'
8016 3' -63.1 NC_001973.1 + 27306 0.66 0.627234
Target:  5'- cUUGCGCAggaUCGUCGacuuggucaggcaCGCCaCGCCGCu -3'
miRNA:   3'- cAGCGCGU---AGCGGCg------------GUGGcGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 98267 0.66 0.621417
Target:  5'- gGUCGCGU-UCGCucCGCaCugUGCGCUGg -3'
miRNA:   3'- -CAGCGCGuAGCG--GCG-GugGCGCGGCg -5'
8016 3' -63.1 NC_001973.1 + 96614 0.66 0.621417
Target:  5'- -aCGCGCAcggcuaccugUCGCgGCCGgcggCGCGCCa- -3'
miRNA:   3'- caGCGCGU----------AGCGgCGGUg---GCGCGGcg -5'
8016 3' -63.1 NC_001973.1 + 82799 0.66 0.621417
Target:  5'- --gGCGCugaUGCCGCCcaACgGCGCCcaGCa -3'
miRNA:   3'- cagCGCGua-GCGGCGG--UGgCGCGG--CG- -5'
8016 3' -63.1 NC_001973.1 + 82497 0.66 0.621417
Target:  5'- -aCGCGCGccUUGCCGgCGUCGCgGCCGg -3'
miRNA:   3'- caGCGCGU--AGCGGCgGUGGCG-CGGCg -5'
8016 3' -63.1 NC_001973.1 + 68002 0.66 0.621417
Target:  5'- --aGCGCGUCGagguugucgagaCUGgCGcCCGCGUCGCg -3'
miRNA:   3'- cagCGCGUAGC------------GGCgGU-GGCGCGGCG- -5'
8016 3' -63.1 NC_001973.1 + 7100 0.66 0.621417
Target:  5'- -gCGCGCG-CGaCCGCCGUCGUGCuCGa -3'
miRNA:   3'- caGCGCGUaGC-GGCGGUGGCGCG-GCg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.