miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8054 3' -55.4 NC_001973.1 + 133468 0.66 0.924051
Target:  5'- -cGCGCacggaGCGCCaGcGGGCGAGcACg -3'
miRNA:   3'- gaUGCGaaa--CGCGG-CuCCCGCUCaUG- -5'
8054 3' -55.4 NC_001973.1 + 59925 0.66 0.924051
Target:  5'- -cGCGCgccgcgGCGCCGcAGcGCGAcGUGCu -3'
miRNA:   3'- gaUGCGaaa---CGCGGC-UCcCGCU-CAUG- -5'
8054 3' -55.4 NC_001973.1 + 95717 0.66 0.918456
Target:  5'- -gGCGCggUGCGCCGGcuguuGGCGcAGgGCg -3'
miRNA:   3'- gaUGCGaaACGCGGCUc----CCGC-UCaUG- -5'
8054 3' -55.4 NC_001973.1 + 136435 0.66 0.912621
Target:  5'- gCUGCGCga-GCGCa-GGGGCGcGUAg -3'
miRNA:   3'- -GAUGCGaaaCGCGgcUCCCGCuCAUg -5'
8054 3' -55.4 NC_001973.1 + 146067 0.66 0.906546
Target:  5'- --cCGCg--GCGCCGAgccggcucgggcGGGCGGGgACu -3'
miRNA:   3'- gauGCGaaaCGCGGCU------------CCCGCUCaUG- -5'
8054 3' -55.4 NC_001973.1 + 4236 0.67 0.893688
Target:  5'- -gGCGCUcguUUGCG-UGAGcGGCGcGUACg -3'
miRNA:   3'- gaUGCGA---AACGCgGCUC-CCGCuCAUG- -5'
8054 3' -55.4 NC_001973.1 + 6107 0.67 0.879905
Target:  5'- gUGCGCaugacgGCGCgCGAGGGCGcc-GCg -3'
miRNA:   3'- gAUGCGaaa---CGCG-GCUCCCGCucaUG- -5'
8054 3' -55.4 NC_001973.1 + 124090 0.67 0.879905
Target:  5'- -gACGC---GCGCCGc-GGCGAGUAUu -3'
miRNA:   3'- gaUGCGaaaCGCGGCucCCGCUCAUG- -5'
8054 3' -55.4 NC_001973.1 + 17830 0.68 0.865232
Target:  5'- -gACGCgc--CGUCGAGGGUGGcGUGCc -3'
miRNA:   3'- gaUGCGaaacGCGGCUCCCGCU-CAUG- -5'
8054 3' -55.4 NC_001973.1 + 7929 0.68 0.841649
Target:  5'- -aGCGCgugUGCGCgGccGGCGuGGUGCa -3'
miRNA:   3'- gaUGCGaa-ACGCGgCucCCGC-UCAUG- -5'
8054 3' -55.4 NC_001973.1 + 4650 0.68 0.833395
Target:  5'- -gGCgGCgg-GCGCCGucGGCGAGUcggACa -3'
miRNA:   3'- gaUG-CGaaaCGCGGCucCCGCUCA---UG- -5'
8054 3' -55.4 NC_001973.1 + 109526 0.69 0.816338
Target:  5'- gCUugGCUcUUGCGCUuuuGGGGcGCGAGccGCg -3'
miRNA:   3'- -GAugCGA-AACGCGG---CUCC-CGCUCa-UG- -5'
8054 3' -55.4 NC_001973.1 + 58965 0.69 0.805776
Target:  5'- cCUGCGCguguacuuggacgGCGCCGAGcacaagaucgcgcaGGCGAGcgGCg -3'
miRNA:   3'- -GAUGCGaaa----------CGCGGCUC--------------CCGCUCa-UG- -5'
8054 3' -55.4 NC_001973.1 + 9639 0.69 0.798606
Target:  5'- -gGCGUUcgGC-UCGAGGGCGcGGUACa -3'
miRNA:   3'- gaUGCGAaaCGcGGCUCCCGC-UCAUG- -5'
8054 3' -55.4 NC_001973.1 + 59540 0.69 0.789508
Target:  5'- aUGCGCUUggacGCgGCCaAGGGCGucgcGGUGCu -3'
miRNA:   3'- gAUGCGAAa---CG-CGGcUCCCGC----UCAUG- -5'
8054 3' -55.4 NC_001973.1 + 134351 0.7 0.722323
Target:  5'- -gGCGCUcgaCGCCGAgGGGCGAuUGCa -3'
miRNA:   3'- gaUGCGAaacGCGGCU-CCCGCUcAUG- -5'
8054 3' -55.4 NC_001973.1 + 46237 0.71 0.702283
Target:  5'- gUGCGCgcUGUGCCGca-GCGAGUACu -3'
miRNA:   3'- gAUGCGaaACGCGGCuccCGCUCAUG- -5'
8054 3' -55.4 NC_001973.1 + 75967 0.72 0.651296
Target:  5'- gCUGCGCUcguuCGUCGAGGGCGAaaACg -3'
miRNA:   3'- -GAUGCGAaac-GCGGCUCCCGCUcaUG- -5'
8054 3' -55.4 NC_001973.1 + 144214 0.73 0.56931
Target:  5'- -aGCGCg--GCGCCGAGgccgaaucgcuGGuCGAGUGCg -3'
miRNA:   3'- gaUGCGaaaCGCGGCUC-----------CC-GCUCAUG- -5'
8054 3' -55.4 NC_001973.1 + 61047 0.75 0.471069
Target:  5'- aCUGCGCgacGCaGCagcagCGGGGGCGGGUACa -3'
miRNA:   3'- -GAUGCGaaaCG-CG-----GCUCCCGCUCAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.