Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 133468 | 0.66 | 0.924051 |
Target: 5'- -cGCGCacggaGCGCCaGcGGGCGAGcACg -3' miRNA: 3'- gaUGCGaaa--CGCGG-CuCCCGCUCaUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 59925 | 0.66 | 0.924051 |
Target: 5'- -cGCGCgccgcgGCGCCGcAGcGCGAcGUGCu -3' miRNA: 3'- gaUGCGaaa---CGCGGC-UCcCGCU-CAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 95717 | 0.66 | 0.918456 |
Target: 5'- -gGCGCggUGCGCCGGcuguuGGCGcAGgGCg -3' miRNA: 3'- gaUGCGaaACGCGGCUc----CCGC-UCaUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 136435 | 0.66 | 0.912621 |
Target: 5'- gCUGCGCga-GCGCa-GGGGCGcGUAg -3' miRNA: 3'- -GAUGCGaaaCGCGgcUCCCGCuCAUg -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 146067 | 0.66 | 0.906546 |
Target: 5'- --cCGCg--GCGCCGAgccggcucgggcGGGCGGGgACu -3' miRNA: 3'- gauGCGaaaCGCGGCU------------CCCGCUCaUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 4236 | 0.67 | 0.893688 |
Target: 5'- -gGCGCUcguUUGCG-UGAGcGGCGcGUACg -3' miRNA: 3'- gaUGCGA---AACGCgGCUC-CCGCuCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 6107 | 0.67 | 0.879905 |
Target: 5'- gUGCGCaugacgGCGCgCGAGGGCGcc-GCg -3' miRNA: 3'- gAUGCGaaa---CGCG-GCUCCCGCucaUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 124090 | 0.67 | 0.879905 |
Target: 5'- -gACGC---GCGCCGc-GGCGAGUAUu -3' miRNA: 3'- gaUGCGaaaCGCGGCucCCGCUCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 17830 | 0.68 | 0.865232 |
Target: 5'- -gACGCgc--CGUCGAGGGUGGcGUGCc -3' miRNA: 3'- gaUGCGaaacGCGGCUCCCGCU-CAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 7929 | 0.68 | 0.841649 |
Target: 5'- -aGCGCgugUGCGCgGccGGCGuGGUGCa -3' miRNA: 3'- gaUGCGaa-ACGCGgCucCCGC-UCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 4650 | 0.68 | 0.833395 |
Target: 5'- -gGCgGCgg-GCGCCGucGGCGAGUcggACa -3' miRNA: 3'- gaUG-CGaaaCGCGGCucCCGCUCA---UG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 109526 | 0.69 | 0.816338 |
Target: 5'- gCUugGCUcUUGCGCUuuuGGGGcGCGAGccGCg -3' miRNA: 3'- -GAugCGA-AACGCGG---CUCC-CGCUCa-UG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 58965 | 0.69 | 0.805776 |
Target: 5'- cCUGCGCguguacuuggacgGCGCCGAGcacaagaucgcgcaGGCGAGcgGCg -3' miRNA: 3'- -GAUGCGaaa----------CGCGGCUC--------------CCGCUCa-UG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 9639 | 0.69 | 0.798606 |
Target: 5'- -gGCGUUcgGC-UCGAGGGCGcGGUACa -3' miRNA: 3'- gaUGCGAaaCGcGGCUCCCGC-UCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 59540 | 0.69 | 0.789508 |
Target: 5'- aUGCGCUUggacGCgGCCaAGGGCGucgcGGUGCu -3' miRNA: 3'- gAUGCGAAa---CG-CGGcUCCCGC----UCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 134351 | 0.7 | 0.722323 |
Target: 5'- -gGCGCUcgaCGCCGAgGGGCGAuUGCa -3' miRNA: 3'- gaUGCGAaacGCGGCU-CCCGCUcAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 46237 | 0.71 | 0.702283 |
Target: 5'- gUGCGCgcUGUGCCGca-GCGAGUACu -3' miRNA: 3'- gAUGCGaaACGCGGCuccCGCUCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 75967 | 0.72 | 0.651296 |
Target: 5'- gCUGCGCUcguuCGUCGAGGGCGAaaACg -3' miRNA: 3'- -GAUGCGAaac-GCGGCUCCCGCUcaUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 144214 | 0.73 | 0.56931 |
Target: 5'- -aGCGCg--GCGCCGAGgccgaaucgcuGGuCGAGUGCg -3' miRNA: 3'- gaUGCGaaaCGCGGCUC-----------CC-GCUCAUG- -5' |
|||||||
8054 | 3' | -55.4 | NC_001973.1 | + | 61047 | 0.75 | 0.471069 |
Target: 5'- aCUGCGCgacGCaGCagcagCGGGGGCGGGUACa -3' miRNA: 3'- -GAUGCGaaaCG-CG-----GCUCCCGCUCAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home