miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8055 3' -60 NC_001973.1 + 103933 0.66 0.779351
Target:  5'- gUCG-UCGCggCGCgGGgcgugccguCGCGGCGCCAGc -3'
miRNA:   3'- -AGCuGGCGa-GCGaCU---------GCGUCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 30383 0.66 0.779351
Target:  5'- cUCGGgUGCggGCcGGCGCGGCGgCGGc -3'
miRNA:   3'- -AGCUgGCGagCGaCUGCGUCGCgGUC- -5'
8055 3' -60 NC_001973.1 + 111056 0.66 0.779351
Target:  5'- uUCGG-CG-UCGCUGcucaACGCGGCGCCc- -3'
miRNA:   3'- -AGCUgGCgAGCGAC----UGCGUCGCGGuc -5'
8055 3' -60 NC_001973.1 + 5024 0.66 0.776645
Target:  5'- -gGugCGCUCuucucuGCUGucggcguugagaaaGCGCAGCGUCAa -3'
miRNA:   3'- agCugGCGAG------CGAC--------------UGCGUCGCGGUc -5'
8055 3' -60 NC_001973.1 + 132535 0.66 0.770289
Target:  5'- -aGGCCGC-CG--GGCGCGGCGgCGGg -3'
miRNA:   3'- agCUGGCGaGCgaCUGCGUCGCgGUC- -5'
8055 3' -60 NC_001973.1 + 123415 0.66 0.770289
Target:  5'- gCGcACCGcCUCGCcggUGcACGCGGuCGUCAGc -3'
miRNA:   3'- aGC-UGGC-GAGCG---AC-UGCGUC-GCGGUC- -5'
8055 3' -60 NC_001973.1 + 35165 0.66 0.770289
Target:  5'- gCGA-CGCUgGCgcGACGCAGCGaCCu- -3'
miRNA:   3'- aGCUgGCGAgCGa-CUGCGUCGC-GGuc -5'
8055 3' -60 NC_001973.1 + 104236 0.66 0.762034
Target:  5'- cUCGGCgCGCUgCGCguccgucagcuguucGGCgGCGGCGCCGc -3'
miRNA:   3'- -AGCUG-GCGA-GCGa--------------CUG-CGUCGCGGUc -5'
8055 3' -60 NC_001973.1 + 96574 0.66 0.761111
Target:  5'- aCGAuCUGCgCGgUGGCgGCGGCGCUGGc -3'
miRNA:   3'- aGCU-GGCGaGCgACUG-CGUCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 32212 0.66 0.761111
Target:  5'- -aGuCCGCUUGCgcgccccacGGCGCcugauugacgGGCGCCGGa -3'
miRNA:   3'- agCuGGCGAGCGa--------CUGCG----------UCGCGGUC- -5'
8055 3' -60 NC_001973.1 + 94518 0.66 0.761111
Target:  5'- gCGACCGC-CGCcc-CGCccggcGCGCCGGu -3'
miRNA:   3'- aGCUGGCGaGCGacuGCGu----CGCGGUC- -5'
8055 3' -60 NC_001973.1 + 122714 0.66 0.751825
Target:  5'- uUCGACCGCgccgucggUCGCgacgGACaGCAGCuuGCgCGGc -3'
miRNA:   3'- -AGCUGGCG--------AGCGa---CUG-CGUCG--CG-GUC- -5'
8055 3' -60 NC_001973.1 + 84307 0.66 0.751825
Target:  5'- aCGGCCGCgucCGCcgcccagGACGuCAGCuacgGCCGGc -3'
miRNA:   3'- aGCUGGCGa--GCGa------CUGC-GUCG----CGGUC- -5'
8055 3' -60 NC_001973.1 + 45972 0.66 0.751825
Target:  5'- cCGGCgCGCUCGCccugcUGuCGCuGGUGCCGc -3'
miRNA:   3'- aGCUG-GCGAGCG-----ACuGCG-UCGCGGUc -5'
8055 3' -60 NC_001973.1 + 45618 0.66 0.750891
Target:  5'- gUCGGCgaucagguccacgCGCUCGUcGAgCGCGGCGUCGu -3'
miRNA:   3'- -AGCUG-------------GCGAGCGaCU-GCGUCGCGGUc -5'
8055 3' -60 NC_001973.1 + 39416 0.66 0.74244
Target:  5'- gUCGGCCGCg-GUgaGGCGCGucGCGuCCAGg -3'
miRNA:   3'- -AGCUGGCGagCGa-CUGCGU--CGC-GGUC- -5'
8055 3' -60 NC_001973.1 + 10299 0.66 0.74244
Target:  5'- gCGAagcCCGCgUCGCacGCGCAGCGCagCGGg -3'
miRNA:   3'- aGCU---GGCG-AGCGacUGCGUCGCG--GUC- -5'
8055 3' -60 NC_001973.1 + 69828 0.66 0.74244
Target:  5'- gUCGACCaGCUCGCac-UGCAaCGCCAc -3'
miRNA:   3'- -AGCUGG-CGAGCGacuGCGUcGCGGUc -5'
8055 3' -60 NC_001973.1 + 23210 0.66 0.732965
Target:  5'- cCGACgaGCgCGCagUGGCGCAGgGCCuGg -3'
miRNA:   3'- aGCUGg-CGaGCG--ACUGCGUCgCGGuC- -5'
8055 3' -60 NC_001973.1 + 39385 0.67 0.723407
Target:  5'- cCGAggucacCUGCUCGaC-GGCGC-GCGCCAGg -3'
miRNA:   3'- aGCU------GGCGAGC-GaCUGCGuCGCGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.