miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8056 5' -57.7 NC_001973.1 + 6836 0.66 0.846133
Target:  5'- gUACgCGUCGCgaGUGCGC-UCGACGGa -3'
miRNA:   3'- -GUGgGCGGCGacUACGCGaAGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 36835 0.66 0.838854
Target:  5'- aACCCGCCGaccggcCUGAgggccgacucggcgcGCGCUcuguUCGACGAc -3'
miRNA:   3'- gUGGGCGGC------GACUa--------------CGCGA----AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 5925 0.66 0.838036
Target:  5'- uCGCCCGCggucgCGCgcacGAUGCGCgacgCGGCc- -3'
miRNA:   3'- -GUGGGCG-----GCGa---CUACGCGaa--GCUGuu -5'
8056 5' -57.7 NC_001973.1 + 114445 0.66 0.838036
Target:  5'- gGCUCGCgaaGCUGGUGUGCU-CG-CAAa -3'
miRNA:   3'- gUGGGCGg--CGACUACGCGAaGCuGUU- -5'
8056 5' -57.7 NC_001973.1 + 118463 0.66 0.83557
Target:  5'- gCGCCCGCCGUcGucgGCGCgucccaacuacguggCGGCGAc -3'
miRNA:   3'- -GUGGGCGGCGaCua-CGCGaa-------------GCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 74541 0.66 0.833917
Target:  5'- cCGCCCGCCacgcaccGCaaauacauuguggGAUGCGCggCGGCGg -3'
miRNA:   3'- -GUGGGCGG-------CGa------------CUACGCGaaGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 146017 0.66 0.829753
Target:  5'- -gUCCGCCgGCUcGA-GCGCgggUCGACGGa -3'
miRNA:   3'- guGGGCGG-CGA-CUaCGCGa--AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 95417 0.66 0.829753
Target:  5'- aACCCGCUGCUGGgcgaCGCggagcgCGACc- -3'
miRNA:   3'- gUGGGCGGCGACUac--GCGaa----GCUGuu -5'
8056 5' -57.7 NC_001973.1 + 111331 0.66 0.829753
Target:  5'- uCACCCuGUggaCGCUGGUGCGCgaccacCGGCu- -3'
miRNA:   3'- -GUGGG-CG---GCGACUACGCGaa----GCUGuu -5'
8056 5' -57.7 NC_001973.1 + 133658 0.66 0.827233
Target:  5'- gCAgCCGCCGUUGAUGaGCgagcgcccgaaccggCGACAGu -3'
miRNA:   3'- -GUgGGCGGCGACUACgCGaa-------------GCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 9108 0.66 0.824696
Target:  5'- gCAuCCgCGCCGCgu-UGCGCUcgcacacggcgaugaUCGACGAg -3'
miRNA:   3'- -GU-GG-GCGGCGacuACGCGA---------------AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 96505 0.66 0.82129
Target:  5'- uGCgCUGCCGCaucGUGCGCUUCGcuCGAg -3'
miRNA:   3'- gUG-GGCGGCGac-UACGCGAAGCu-GUU- -5'
8056 5' -57.7 NC_001973.1 + 119327 0.66 0.81613
Target:  5'- gCGCCCGCCGC-GAguucgaucuacgaccUGCGCaUCaACAAc -3'
miRNA:   3'- -GUGGGCGGCGaCU---------------ACGCGaAGcUGUU- -5'
8056 5' -57.7 NC_001973.1 + 8429 0.66 0.812657
Target:  5'- gAgCCGCCGCgucgucGCGCccgUCGACGAa -3'
miRNA:   3'- gUgGGCGGCGacua--CGCGa--AGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 76389 0.66 0.812657
Target:  5'- aACCCGguggaCGUgaacguggUGAaGCGCUUCGACAGc -3'
miRNA:   3'- gUGGGCg----GCG--------ACUaCGCGAAGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 122839 0.66 0.812657
Target:  5'- --aCCGCCGUUGAUGCGCa------- -3'
miRNA:   3'- gugGGCGGCGACUACGCGaagcuguu -5'
8056 5' -57.7 NC_001973.1 + 158038 0.66 0.812657
Target:  5'- --gCCGCCGCgcccGUGCGUagCGACGAc -3'
miRNA:   3'- gugGGCGGCGac--UACGCGaaGCUGUU- -5'
8056 5' -57.7 NC_001973.1 + 92699 0.66 0.807397
Target:  5'- -uCCCGCCGCUcauUGCGCguccgcuucucgagUCGACc- -3'
miRNA:   3'- guGGGCGGCGAcu-ACGCGa-------------AGCUGuu -5'
8056 5' -57.7 NC_001973.1 + 56168 0.66 0.803859
Target:  5'- aCugUCGUCGCUGucggcgGCGCgcUCGACGu -3'
miRNA:   3'- -GugGGCGGCGACua----CGCGa-AGCUGUu -5'
8056 5' -57.7 NC_001973.1 + 23265 0.67 0.794907
Target:  5'- -cCCCGCCGCgc--GCGCUUgccCGGCGg -3'
miRNA:   3'- guGGGCGGCGacuaCGCGAA---GCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.