miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8059 5' -59.2 NC_001973.1 + 94531 0.66 0.812348
Target:  5'- cGCccggCGCGCCGGuCAUCGACUgGGCg- -3'
miRNA:   3'- cCGa---GCGCGGCCuGUGGUUGG-UCGac -5'
8059 5' -59.2 NC_001973.1 + 118423 0.66 0.812348
Target:  5'- cGCUgGcCGCCGGGC-UCGACgAGCg- -3'
miRNA:   3'- cCGAgC-GCGGCCUGuGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 141949 0.66 0.812348
Target:  5'- aGCUCGcCGgCGGGCgACCc-CCAGCg- -3'
miRNA:   3'- cCGAGC-GCgGCCUG-UGGuuGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 6408 0.66 0.812348
Target:  5'- uGGCcgagugCGCGgCGGcggcGCGCCGACgAGCg- -3'
miRNA:   3'- -CCGa-----GCGCgGCC----UGUGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 23684 0.66 0.812348
Target:  5'- gGGCcuccgCGCGUC-GACGC--GCCAGCUGc -3'
miRNA:   3'- -CCGa----GCGCGGcCUGUGguUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 25068 0.66 0.812348
Target:  5'- cGCguucgCGCGCCaGcucauCACCGACCGGUg- -3'
miRNA:   3'- cCGa----GCGCGGcCu----GUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 81803 0.66 0.812348
Target:  5'- cGGC-CGCGguguCCGG-CGCCG-CCGGCg- -3'
miRNA:   3'- -CCGaGCGC----GGCCuGUGGUuGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 26192 0.66 0.811496
Target:  5'- cGGCgcuccagUUGCGgaaGGACGCCAGCCuGCg- -3'
miRNA:   3'- -CCG-------AGCGCgg-CCUGUGGUUGGuCGac -5'
8059 5' -59.2 NC_001973.1 + 21309 0.66 0.811496
Target:  5'- gGGCUUGCgcaucccgaugauGCCGcACGCgAGCCGGCc- -3'
miRNA:   3'- -CCGAGCG-------------CGGCcUGUGgUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 6177 0.66 0.803755
Target:  5'- gGGaCUUGUGCUucaugacgguGGugAUCAACCGGCg- -3'
miRNA:   3'- -CC-GAGCGCGG----------CCugUGGUUGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 109329 0.66 0.803755
Target:  5'- cGCgCGCGaaCCGGAacaGCCGGCgCAGCUc -3'
miRNA:   3'- cCGaGCGC--GGCCUg--UGGUUG-GUCGAc -5'
8059 5' -59.2 NC_001973.1 + 122607 0.66 0.803755
Target:  5'- cGGCggagGCGUCGGcgGCGCCGacgcgggcGCCGGCg- -3'
miRNA:   3'- -CCGag--CGCGGCC--UGUGGU--------UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 59974 0.66 0.795014
Target:  5'- aGGCa-GcCGCCGGGCccagACCGcgGCCGGCg- -3'
miRNA:   3'- -CCGagC-GCGGCCUG----UGGU--UGGUCGac -5'
8059 5' -59.2 NC_001973.1 + 138129 0.66 0.795014
Target:  5'- -cCUcCGCGCCGGugGCCAGCguuCUGu -3'
miRNA:   3'- ccGA-GCGCGGCCugUGGUUGgucGAC- -5'
8059 5' -59.2 NC_001973.1 + 23593 0.66 0.795014
Target:  5'- cGCUgCGCGCCauaaacGACACCAACaagAGCg- -3'
miRNA:   3'- cCGA-GCGCGGc-----CUGUGGUUGg--UCGac -5'
8059 5' -59.2 NC_001973.1 + 39429 0.66 0.795014
Target:  5'- aGGCgcgUCGCGUCcagggcGACGCCGAugcCCAGCUc -3'
miRNA:   3'- -CCG---AGCGCGGc-----CUGUGGUU---GGUCGAc -5'
8059 5' -59.2 NC_001973.1 + 86746 0.66 0.795014
Target:  5'- cGGCg-GCGCgCGGccucguuccGCGCCuucaaGGCCGGCUGc -3'
miRNA:   3'- -CCGagCGCG-GCC---------UGUGG-----UUGGUCGAC- -5'
8059 5' -59.2 NC_001973.1 + 69318 0.66 0.795014
Target:  5'- cGGCUCGUGCagaGcuuGCGCCAGCaAGCg- -3'
miRNA:   3'- -CCGAGCGCGg--Cc--UGUGGUUGgUCGac -5'
8059 5' -59.2 NC_001973.1 + 133495 0.66 0.795014
Target:  5'- cGCUCGCGCCGucCAC--GCuCGGCUu -3'
miRNA:   3'- cCGAGCGCGGCcuGUGguUG-GUCGAc -5'
8059 5' -59.2 NC_001973.1 + 48567 0.66 0.786133
Target:  5'- cGGC-CGCGCCGacGACgACCAgaugcgguACguGCUGc -3'
miRNA:   3'- -CCGaGCGCGGC--CUG-UGGU--------UGguCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.