miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8061 5' -64.2 NC_001973.1 + 82901 0.66 0.622486
Target:  5'- cCCGuCgCGCCG-CcGCGCCCGaCCGa -3'
miRNA:   3'- aGGCuGaGCGGCuGcCGCGGGC-GGCg -5'
8061 5' -64.2 NC_001973.1 + 77002 0.66 0.622486
Target:  5'- gCUGAucacCUCGUCgGGCGGCGgCgGCgCGCg -3'
miRNA:   3'- aGGCU----GAGCGG-CUGCCGCgGgCG-GCG- -5'
8061 5' -64.2 NC_001973.1 + 49681 0.66 0.622486
Target:  5'- aUCGACgCGgCGAUGGaccugucgaGCCgCGCCGUg -3'
miRNA:   3'- aGGCUGaGCgGCUGCCg--------CGG-GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 80596 0.66 0.622486
Target:  5'- cUCCacCUUGCCGACGaccuccuugaGCuuGCCGCg -3'
miRNA:   3'- -AGGcuGAGCGGCUGCcg--------CGggCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 94841 0.66 0.622486
Target:  5'- gCCGACa--CgGACGGCGCgcaccucgacCCGCUGCc -3'
miRNA:   3'- aGGCUGagcGgCUGCCGCG----------GGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 110752 0.66 0.622486
Target:  5'- gCCGACagguuugCGCaucucgaGACGGCgGCCUGCUccgGCg -3'
miRNA:   3'- aGGCUGa------GCGg------CUGCCG-CGGGCGG---CG- -5'
8061 5' -64.2 NC_001973.1 + 158760 0.66 0.61297
Target:  5'- aCCGAgCgcgCGCCGACcuacaCGCCCGaCGCc -3'
miRNA:   3'- aGGCU-Ga--GCGGCUGcc---GCGGGCgGCG- -5'
8061 5' -64.2 NC_001973.1 + 111485 0.66 0.61297
Target:  5'- gUUCGuCgccgCGCCGGCGcGCGaCaacugCGCCGCg -3'
miRNA:   3'- -AGGCuGa---GCGGCUGC-CGC-Gg----GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 117505 0.66 0.61297
Target:  5'- cUuuGGC-CGCCGGCGGCGCguagacuuccaCgGCgGUg -3'
miRNA:   3'- -AggCUGaGCGGCUGCCGCG-----------GgCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 35207 0.66 0.61297
Target:  5'- gCCGACgucacCGCCGAcaugcaggcCGGCGCggacgagauguuCCGCUGg -3'
miRNA:   3'- aGGCUGa----GCGGCU---------GCCGCG------------GGCGGCg -5'
8061 5' -64.2 NC_001973.1 + 111849 0.66 0.611068
Target:  5'- -aCGGCUCGCaCGcccaaaucugcuUGGCGCCCGUguccuucuucuCGCg -3'
miRNA:   3'- agGCUGAGCG-GCu-----------GCCGCGGGCG-----------GCG- -5'
8061 5' -64.2 NC_001973.1 + 43946 0.66 0.607266
Target:  5'- gCCGcgaaggccaccaggcGCUCGCCGAaGGCGgCCUcucuGCCGg -3'
miRNA:   3'- aGGC---------------UGAGCGGCUgCCGC-GGG----CGGCg -5'
8061 5' -64.2 NC_001973.1 + 4631 0.66 0.603467
Target:  5'- gUCUGGCguacacccUGUCGGCGGCGggCGCCGUc -3'
miRNA:   3'- -AGGCUGa-------GCGGCUGCCGCggGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 54970 0.66 0.603467
Target:  5'- gCCGAUgagGCCGgagGCGGCGgCgGCgGCa -3'
miRNA:   3'- aGGCUGag-CGGC---UGCCGCgGgCGgCG- -5'
8061 5' -64.2 NC_001973.1 + 72815 0.66 0.603467
Target:  5'- uUCaCGAUgUUGaCGAggcCGGCGgCCGCCGCg -3'
miRNA:   3'- -AG-GCUG-AGCgGCU---GCCGCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 120589 0.66 0.603467
Target:  5'- aCgGGCgCGCCGagucGCGGUGCgccuuccaCGCCGCc -3'
miRNA:   3'- aGgCUGaGCGGC----UGCCGCGg-------GCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 10756 0.66 0.603467
Target:  5'- -gCGGCgggUGCgCGACGG-GCUCGUCGUg -3'
miRNA:   3'- agGCUGa--GCG-GCUGCCgCGGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 74712 0.66 0.603467
Target:  5'- gCCGcCUCGUCGAa-GCGCUCcCCGUg -3'
miRNA:   3'- aGGCuGAGCGGCUgcCGCGGGcGGCG- -5'
8061 5' -64.2 NC_001973.1 + 82957 0.66 0.603467
Target:  5'- aCCGACgcccgCGUCGcCGcCG-CCGCCGCc -3'
miRNA:   3'- aGGCUGa----GCGGCuGCcGCgGGCGGCG- -5'
8061 5' -64.2 NC_001973.1 + 69024 0.66 0.597773
Target:  5'- cCCGACUCGCCccuagaaaaccagcuGAU-GCGCUacggcaCGCUGCa -3'
miRNA:   3'- aGGCUGAGCGG---------------CUGcCGCGG------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.