miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8065 5' -55.2 NC_001973.1 + 111247 0.66 0.949983
Target:  5'- cGGGCgagGgggUCGACGcGgaCGCGCUgcccgUGGg -3'
miRNA:   3'- cCUCGa--Ca--AGCUGC-CgaGCGCGA-----ACC- -5'
8065 5' -55.2 NC_001973.1 + 75523 0.66 0.949983
Target:  5'- cGGAGa--UUCGaacgcggacaGCGGCUCGCGCa--- -3'
miRNA:   3'- -CCUCgacAAGC----------UGCCGAGCGCGaacc -5'
8065 5' -55.2 NC_001973.1 + 56513 0.66 0.945742
Target:  5'- cGGGGCggGcUCGGCGccaaGCUCGgGCggGGc -3'
miRNA:   3'- -CCUCGa-CaAGCUGC----CGAGCgCGaaCC- -5'
8065 5' -55.2 NC_001973.1 + 56459 0.66 0.945742
Target:  5'- cGGGGCggGcUCGGCGccaaGCUCGgGCggGGc -3'
miRNA:   3'- -CCUCGa-CaAGCUGC----CGAGCgCGaaCC- -5'
8065 5' -55.2 NC_001973.1 + 62459 0.66 0.945742
Target:  5'- uGGAGCUGaaaCGGaugGGCUgCGUGCU-GGu -3'
miRNA:   3'- -CCUCGACaa-GCUg--CCGA-GCGCGAaCC- -5'
8065 5' -55.2 NC_001973.1 + 93875 0.66 0.941272
Target:  5'- uGGAGCagccgcacaUGUUCuACGGCcUGCGCUa-- -3'
miRNA:   3'- -CCUCG---------ACAAGcUGCCGaGCGCGAacc -5'
8065 5' -55.2 NC_001973.1 + 8189 0.66 0.936569
Target:  5'- cGAGCgcgcCGACGGCaC-CGCUUGGc -3'
miRNA:   3'- cCUCGacaaGCUGCCGaGcGCGAACC- -5'
8065 5' -55.2 NC_001973.1 + 98337 0.67 0.931634
Target:  5'- --cGCUGcagCGGCGGCggcgCGCGUUcGGc -3'
miRNA:   3'- ccuCGACaa-GCUGCCGa---GCGCGAaCC- -5'
8065 5' -55.2 NC_001973.1 + 39388 0.67 0.931634
Target:  5'- aGGucacCUGcUCGACGGCgCGCGCcaGGu -3'
miRNA:   3'- -CCuc--GACaAGCUGCCGaGCGCGaaCC- -5'
8065 5' -55.2 NC_001973.1 + 146009 0.67 0.915421
Target:  5'- gGGAGCggGUcCGcCGGCUCGaGCgcgGGu -3'
miRNA:   3'- -CCUCGa-CAaGCuGCCGAGCgCGaa-CC- -5'
8065 5' -55.2 NC_001973.1 + 60405 0.67 0.90955
Target:  5'- aGGAGCUGaUCuugcaGCGGg-CGCGCUcgcUGGa -3'
miRNA:   3'- -CCUCGACaAGc----UGCCgaGCGCGA---ACC- -5'
8065 5' -55.2 NC_001973.1 + 96950 0.67 0.903447
Target:  5'- cGAGCcGUUCGACGaCUgGCGCg--- -3'
miRNA:   3'- cCUCGaCAAGCUGCcGAgCGCGaacc -5'
8065 5' -55.2 NC_001973.1 + 92287 0.68 0.890558
Target:  5'- uGGGGCcua--GACGGCUCuaGCUUGu -3'
miRNA:   3'- -CCUCGacaagCUGCCGAGcgCGAACc -5'
8065 5' -55.2 NC_001973.1 + 81072 0.68 0.869565
Target:  5'- -cAGUUGggacaggUCGAUGGCguUCGCGCU-GGg -3'
miRNA:   3'- ccUCGACa------AGCUGCCG--AGCGCGAaCC- -5'
8065 5' -55.2 NC_001973.1 + 77016 0.69 0.846693
Target:  5'- cGGGCgg--CGGCGGCgCGCGCaaGGa -3'
miRNA:   3'- cCUCGacaaGCUGCCGaGCGCGaaCC- -5'
8065 5' -55.2 NC_001973.1 + 96593 0.69 0.838679
Target:  5'- cGGcGCUGgcgaCGACGGCggaCGCGCacGGc -3'
miRNA:   3'- -CCuCGACaa--GCUGCCGa--GCGCGaaCC- -5'
8065 5' -55.2 NC_001973.1 + 83085 0.69 0.838679
Target:  5'- cGAGCgg--CGGCGGCgccgUCGCGCUcaugcaagUGGa -3'
miRNA:   3'- cCUCGacaaGCUGCCG----AGCGCGA--------ACC- -5'
8065 5' -55.2 NC_001973.1 + 141117 0.69 0.838679
Target:  5'- cGAGCUGaaCGcCGGCUCGaCGCa--- -3'
miRNA:   3'- cCUCGACaaGCuGCCGAGC-GCGaacc -5'
8065 5' -55.2 NC_001973.1 + 64087 0.7 0.817
Target:  5'- cGAGCUGUUCGAagucaaacaggccgaCGGCUCGaCGg--GGc -3'
miRNA:   3'- cCUCGACAAGCU---------------GCCGAGC-GCgaaCC- -5'
8065 5' -55.2 NC_001973.1 + 89410 0.7 0.813562
Target:  5'- uGGAGCgacUCGAUGuGCUCGCGUa--- -3'
miRNA:   3'- -CCUCGacaAGCUGC-CGAGCGCGaacc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.