Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8065 | 5' | -55.2 | NC_001973.1 | + | 111247 | 0.66 | 0.949983 |
Target: 5'- cGGGCgagGgggUCGACGcGgaCGCGCUgcccgUGGg -3' miRNA: 3'- cCUCGa--Ca--AGCUGC-CgaGCGCGA-----ACC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 75523 | 0.66 | 0.949983 |
Target: 5'- cGGAGa--UUCGaacgcggacaGCGGCUCGCGCa--- -3' miRNA: 3'- -CCUCgacAAGC----------UGCCGAGCGCGaacc -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 56513 | 0.66 | 0.945742 |
Target: 5'- cGGGGCggGcUCGGCGccaaGCUCGgGCggGGc -3' miRNA: 3'- -CCUCGa-CaAGCUGC----CGAGCgCGaaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 56459 | 0.66 | 0.945742 |
Target: 5'- cGGGGCggGcUCGGCGccaaGCUCGgGCggGGc -3' miRNA: 3'- -CCUCGa-CaAGCUGC----CGAGCgCGaaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 62459 | 0.66 | 0.945742 |
Target: 5'- uGGAGCUGaaaCGGaugGGCUgCGUGCU-GGu -3' miRNA: 3'- -CCUCGACaa-GCUg--CCGA-GCGCGAaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 93875 | 0.66 | 0.941272 |
Target: 5'- uGGAGCagccgcacaUGUUCuACGGCcUGCGCUa-- -3' miRNA: 3'- -CCUCG---------ACAAGcUGCCGaGCGCGAacc -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 8189 | 0.66 | 0.936569 |
Target: 5'- cGAGCgcgcCGACGGCaC-CGCUUGGc -3' miRNA: 3'- cCUCGacaaGCUGCCGaGcGCGAACC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 98337 | 0.67 | 0.931634 |
Target: 5'- --cGCUGcagCGGCGGCggcgCGCGUUcGGc -3' miRNA: 3'- ccuCGACaa-GCUGCCGa---GCGCGAaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 39388 | 0.67 | 0.931634 |
Target: 5'- aGGucacCUGcUCGACGGCgCGCGCcaGGu -3' miRNA: 3'- -CCuc--GACaAGCUGCCGaGCGCGaaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 146009 | 0.67 | 0.915421 |
Target: 5'- gGGAGCggGUcCGcCGGCUCGaGCgcgGGu -3' miRNA: 3'- -CCUCGa-CAaGCuGCCGAGCgCGaa-CC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 60405 | 0.67 | 0.90955 |
Target: 5'- aGGAGCUGaUCuugcaGCGGg-CGCGCUcgcUGGa -3' miRNA: 3'- -CCUCGACaAGc----UGCCgaGCGCGA---ACC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 96950 | 0.67 | 0.903447 |
Target: 5'- cGAGCcGUUCGACGaCUgGCGCg--- -3' miRNA: 3'- cCUCGaCAAGCUGCcGAgCGCGaacc -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 92287 | 0.68 | 0.890558 |
Target: 5'- uGGGGCcua--GACGGCUCuaGCUUGu -3' miRNA: 3'- -CCUCGacaagCUGCCGAGcgCGAACc -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 81072 | 0.68 | 0.869565 |
Target: 5'- -cAGUUGggacaggUCGAUGGCguUCGCGCU-GGg -3' miRNA: 3'- ccUCGACa------AGCUGCCG--AGCGCGAaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 77016 | 0.69 | 0.846693 |
Target: 5'- cGGGCgg--CGGCGGCgCGCGCaaGGa -3' miRNA: 3'- cCUCGacaaGCUGCCGaGCGCGaaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 96593 | 0.69 | 0.838679 |
Target: 5'- cGGcGCUGgcgaCGACGGCggaCGCGCacGGc -3' miRNA: 3'- -CCuCGACaa--GCUGCCGa--GCGCGaaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 83085 | 0.69 | 0.838679 |
Target: 5'- cGAGCgg--CGGCGGCgccgUCGCGCUcaugcaagUGGa -3' miRNA: 3'- cCUCGacaaGCUGCCG----AGCGCGA--------ACC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 141117 | 0.69 | 0.838679 |
Target: 5'- cGAGCUGaaCGcCGGCUCGaCGCa--- -3' miRNA: 3'- cCUCGACaaGCuGCCGAGC-GCGaacc -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 64087 | 0.7 | 0.817 |
Target: 5'- cGAGCUGUUCGAagucaaacaggccgaCGGCUCGaCGg--GGc -3' miRNA: 3'- cCUCGACAAGCU---------------GCCGAGC-GCgaaCC- -5' |
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8065 | 5' | -55.2 | NC_001973.1 | + | 89410 | 0.7 | 0.813562 |
Target: 5'- uGGAGCgacUCGAUGuGCUCGCGUa--- -3' miRNA: 3'- -CCUCGacaAGCUGC-CGAGCGCGaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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