miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 3' -60.8 NC_001973.1 + 153543 0.66 0.771924
Target:  5'- aGAgCCGAgccgCGACCCCcaaCCGAUGCu -3'
miRNA:   3'- cUUgGGCUa---GCUGGGGcc-GGCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 160690 0.66 0.771924
Target:  5'- -uGCCUuaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 130864 0.66 0.771924
Target:  5'- -uGCCUaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 127425 0.66 0.771924
Target:  5'- -uGCCUaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 49694 0.66 0.769243
Target:  5'- uGGACCUG-UCGAgCCgcgccgugcaguauCCGGCCGACGa- -3'
miRNA:   3'- -CUUGGGCuAGCU-GG--------------GGCCGGCUGCgc -5'
8066 3' -60.8 NC_001973.1 + 142411 0.66 0.762947
Target:  5'- aGAGCCggcagaCGAUCGugCCCGgcgaGCCGAuCGUc -3'
miRNA:   3'- -CUUGG------GCUAGCugGGGC----CGGCU-GCGc -5'
8066 3' -60.8 NC_001973.1 + 16180 0.66 0.762947
Target:  5'- -cGCCCGuGUCGGCgCaGGCCGcuagaGCGCGc -3'
miRNA:   3'- cuUGGGC-UAGCUGgGgCCGGC-----UGCGC- -5'
8066 3' -60.8 NC_001973.1 + 74256 0.66 0.762947
Target:  5'- -uGCCCGAugUCGGCggugauguacgUgUGGCCGGCGCc -3'
miRNA:   3'- cuUGGGCU--AGCUG-----------GgGCCGGCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 106862 0.66 0.762947
Target:  5'- -cGCCCGcgCGguauuaucgcGCgCCGGCCGaaccgugcGCGCGg -3'
miRNA:   3'- cuUGGGCuaGC----------UGgGGCCGGC--------UGCGC- -5'
8066 3' -60.8 NC_001973.1 + 16351 0.66 0.762947
Target:  5'- -cGCCUaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 130672 0.66 0.75751
Target:  5'- aAGCCCGaugagaucaugccuaAacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 22766 0.66 0.753865
Target:  5'- cGAGCUCGAcaUCGA-CCUGGUCGG-GCGg -3'
miRNA:   3'- -CUUGGGCU--AGCUgGGGCCGGCUgCGC- -5'
8066 3' -60.8 NC_001973.1 + 95690 0.66 0.753865
Target:  5'- cGGCCCGA-CGAgCCCuacaccGCCGACgGCGc -3'
miRNA:   3'- cUUGGGCUaGCUgGGGc-----CGGCUG-CGC- -5'
8066 3' -60.8 NC_001973.1 + 150198 0.66 0.753865
Target:  5'- uGGGCCgCGGcUCGGCCUCGGCUuGCuggGCGg -3'
miRNA:   3'- -CUUGG-GCU-AGCUGGGGCCGGcUG---CGC- -5'
8066 3' -60.8 NC_001973.1 + 117405 0.66 0.753865
Target:  5'- cAGCUCG-UCGAUCCacguGGCCGACGa- -3'
miRNA:   3'- cUUGGGCuAGCUGGGg---CCGGCUGCgc -5'
8066 3' -60.8 NC_001973.1 + 72262 0.66 0.748369
Target:  5'- aAGCCCGaugacaucaucccuaAcUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U-AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 2854 0.66 0.748369
Target:  5'- aAGCCCGAUgaGAUcaugcuuugaucacgCUCGGCgGACGCGc -3'
miRNA:   3'- cUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 130594 0.66 0.748369
Target:  5'- aAACCCGAUgacaucaugccuaaaCcGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGCUA---------------G-CUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 160440 0.66 0.748369
Target:  5'- aAACCCGAUgacaucaugccuaaaCuGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGCUA---------------G-CUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 72198 0.66 0.744686
Target:  5'- cAugCUGAagUUGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUugGGCU--AGCUgGGGCCGgCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.