miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8066 3' -60.8 NC_001973.1 + 2608 0.68 0.623986
Target:  5'- -cGCCCGAagaaaacuaagcgcCGGCCgCGGCCGAuCGUGa -3'
miRNA:   3'- cuUGGGCUa-------------GCUGGgGCCGGCU-GCGC- -5'
8066 3' -60.8 NC_001973.1 + 2673 0.84 0.071594
Target:  5'- -cGCCCGAgcUCGAgCUCGGCCGACGCGu -3'
miRNA:   3'- cuUGGGCU--AGCUgGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 2776 0.66 0.729818
Target:  5'- aAGCCCGAUgaGAUcacgccuaaauugagCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 2854 0.66 0.748369
Target:  5'- aAGCCCGAUgaGAUcaugcuuugaucacgCUCGGCgGACGCGc -3'
miRNA:   3'- cUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 3768 0.68 0.629827
Target:  5'- cGAACCgCGcgCGcGCCCCguccacGGCCGcCGCGc -3'
miRNA:   3'- -CUUGG-GCuaGC-UGGGG------CCGGCuGCGC- -5'
8066 3' -60.8 NC_001973.1 + 7048 0.67 0.713806
Target:  5'- cGAgUCGGUCGugaacgagcugcgcGCCCUGGUCGAgCGCGa -3'
miRNA:   3'- cUUgGGCUAGC--------------UGGGGCCGGCU-GCGC- -5'
8066 3' -60.8 NC_001973.1 + 8828 0.66 0.744686
Target:  5'- cGAGCCCGcccgcCGuCCCgCGcuGCUGGCGCGg -3'
miRNA:   3'- -CUUGGGCua---GCuGGG-GC--CGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 10165 0.68 0.646374
Target:  5'- cGAGCgCCGGguggUCGACCCgcacgaagccgucgCGGCaCGGCGCc -3'
miRNA:   3'- -CUUG-GGCU----AGCUGGG--------------GCCG-GCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 12103 0.69 0.590966
Target:  5'- -uGCCCaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 12165 0.7 0.509331
Target:  5'- cGAGCCCGAUgaGAUcaugccuaaacugagCUCGGCgGACGCGu -3'
miRNA:   3'- -CUUGGGCUAg-CUG---------------GGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 12338 0.69 0.590966
Target:  5'- -uGCCCaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 14549 0.67 0.67838
Target:  5'- --gUUCGuUCGACggCCGGCCGGCGCa -3'
miRNA:   3'- cuuGGGCuAGCUGg-GGCCGGCUGCGc -5'
8066 3' -60.8 NC_001973.1 + 16180 0.66 0.762947
Target:  5'- -cGCCCGuGUCGGCgCaGGCCGcuagaGCGCGc -3'
miRNA:   3'- cuUGGGC-UAGCUGgGgCCGGC-----UGCGC- -5'
8066 3' -60.8 NC_001973.1 + 16351 0.66 0.762947
Target:  5'- -cGCCUaaacUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cuUGGGcu--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 16414 0.67 0.720423
Target:  5'- aAGCCCGaugacaucaugcuucGcUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U-AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 16492 0.67 0.720423
Target:  5'- aAGCCCGaugacaucaugcuucGcUCGAgCUCGGCgGACGCGu -3'
miRNA:   3'- cUUGGGC---------------U-AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 19678 0.74 0.32535
Target:  5'- -uAUUCGAaaUCGcGCCUCGGCCGGCGCGu -3'
miRNA:   3'- cuUGGGCU--AGC-UGGGGCCGGCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 21052 0.76 0.227172
Target:  5'- -uGCCCGAgcUCGAgCUCGGCgGGCGCGu -3'
miRNA:   3'- cuUGGGCU--AGCUgGGGCCGgCUGCGC- -5'
8066 3' -60.8 NC_001973.1 + 22715 0.72 0.409363
Target:  5'- cGACCUGAUCGACgaCCUGGgCGAgcCGCGg -3'
miRNA:   3'- cUUGGGCUAGCUG--GGGCCgGCU--GCGC- -5'
8066 3' -60.8 NC_001973.1 + 22766 0.66 0.753865
Target:  5'- cGAGCUCGAcaUCGA-CCUGGUCGG-GCGg -3'
miRNA:   3'- -CUUGGGCU--AGCUgGGGCCGGCUgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.