miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8068 5' -51.5 NC_001973.1 + 145101 0.66 0.992073
Target:  5'- uGAGCUucaGAGUGGCCGACGccaAGUugacggccgaGCAGg -3'
miRNA:   3'- gUUUGG---CUUACCGGCUGUa--UCG----------CGUC- -5'
8068 5' -51.5 NC_001973.1 + 18896 0.66 0.991963
Target:  5'- --cACCGAAUGGCUguucaaaGACcagGGCGCc- -3'
miRNA:   3'- guuUGGCUUACCGG-------CUGua-UCGCGuc -5'
8068 5' -51.5 NC_001973.1 + 55665 0.66 0.99139
Target:  5'- gGAGCCGA--GGCCGGCggugaaucgcgucccGUcGCGCAc -3'
miRNA:   3'- gUUUGGCUuaCCGGCUG---------------UAuCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 88477 0.66 0.99091
Target:  5'- aCAcgUCGAcgGUGccGCCGGCGcGGCGCGGc -3'
miRNA:   3'- -GUuuGGCU--UAC--CGGCUGUaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 30486 0.66 0.99091
Target:  5'- -uGGCCGcagucgGGCaCGACGguGCGCAGg -3'
miRNA:   3'- guUUGGCuua---CCG-GCUGUauCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 123282 0.66 0.989616
Target:  5'- aCAGGCCGGGcaGGCgCGGCc-AGCGCAc -3'
miRNA:   3'- -GUUUGGCUUa-CCG-GCUGuaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 84214 0.66 0.988332
Target:  5'- gAGGCCGAGUcgagcGGCCuGACGaggagguugcaggagAGCGCGGc -3'
miRNA:   3'- gUUUGGCUUA-----CCGG-CUGUa--------------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 158825 0.66 0.988182
Target:  5'- gAAGCCGGc-GGCCGAgc--GCGCGGa -3'
miRNA:   3'- gUUUGGCUuaCCGGCUguauCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 45934 0.66 0.988182
Target:  5'- --cGCCGAcGUGGCCGuguacGGCGCGc -3'
miRNA:   3'- guuUGGCU-UACCGGCugua-UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 10169 0.66 0.988182
Target:  5'- --cGCCGggUGGUCGACc---CGCAc -3'
miRNA:   3'- guuUGGCuuACCGGCUGuaucGCGUc -5'
8068 5' -51.5 NC_001973.1 + 74325 0.66 0.987252
Target:  5'- uCGAGCagucugcggucaaaGAuAUGGCCGGC--GGCGCAGc -3'
miRNA:   3'- -GUUUGg-------------CU-UACCGGCUGuaUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 29104 0.66 0.9866
Target:  5'- cCAAACCGuacaGGUCGACGaacGCGCGc -3'
miRNA:   3'- -GUUUGGCuua-CCGGCUGUau-CGCGUc -5'
8068 5' -51.5 NC_001973.1 + 79697 0.66 0.9866
Target:  5'- --uGCCGAuuuGCCGGCuuUGGCGCGu -3'
miRNA:   3'- guuUGGCUuacCGGCUGu-AUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 27843 0.66 0.9866
Target:  5'- gCGGcCCGGuUGGCCGGCGcUGGCGg-- -3'
miRNA:   3'- -GUUuGGCUuACCGGCUGU-AUCGCguc -5'
8068 5' -51.5 NC_001973.1 + 118426 0.66 0.98486
Target:  5'- -uGGCCGccgGGCuCGACG-AGCGCAa -3'
miRNA:   3'- guUUGGCuuaCCG-GCUGUaUCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 8172 0.67 0.982953
Target:  5'- ---gUCGGcgGGUCGACGgacgAGCGCGc -3'
miRNA:   3'- guuuGGCUuaCCGGCUGUa---UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 13055 0.67 0.982953
Target:  5'- --uACCGAccacaccaacgcGUugcaaGCCGugGUGGCGCAGa -3'
miRNA:   3'- guuUGGCU------------UAc----CGGCugUAUCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 103904 0.67 0.982953
Target:  5'- gCGAGCCGccgcGGCgCGACGaggAGCGCGu -3'
miRNA:   3'- -GUUUGGCuua-CCG-GCUGUa--UCGCGUc -5'
8068 5' -51.5 NC_001973.1 + 132534 0.67 0.982953
Target:  5'- gAGGCCGccgGGCgCGGCGgcgggcucgAGCGCGGc -3'
miRNA:   3'- gUUUGGCuuaCCG-GCUGUa--------UCGCGUC- -5'
8068 5' -51.5 NC_001973.1 + 87442 0.67 0.98087
Target:  5'- -uAGCCauggGGAUGGgcCCGACGgcGCGCAGc -3'
miRNA:   3'- guUUGG----CUUACC--GGCUGUauCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.