miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8069 3' -57.1 NC_001973.1 + 124774 0.66 0.861941
Target:  5'- cGcgCGCUCUGUUCGAcuAUCUGGCCGc -3'
miRNA:   3'- -CuaGUGGGACGAGCUccUGGACUGGU- -5'
8069 3' -57.1 NC_001973.1 + 49010 0.67 0.8217
Target:  5'- -cUCACCUUGCuUCGAacGCCUuGGCCAa -3'
miRNA:   3'- cuAGUGGGACG-AGCUccUGGA-CUGGU- -5'
8069 3' -57.1 NC_001973.1 + 119215 0.67 0.795454
Target:  5'- -cUCGCCCUGCgUCGAGGucgacGCC-GAgCAg -3'
miRNA:   3'- cuAGUGGGACG-AGCUCC-----UGGaCUgGU- -5'
8069 3' -57.1 NC_001973.1 + 98770 0.69 0.728546
Target:  5'- uGUCGCCCUGCUggugaaaCGAGGACaucgUGugCc -3'
miRNA:   3'- cUAGUGGGACGA-------GCUCCUGg---ACugGu -5'
8069 3' -57.1 NC_001973.1 + 146658 0.69 0.719701
Target:  5'- --cCACCCUGUUgagcgcgcucaCGAGGuCCUgGACCAg -3'
miRNA:   3'- cuaGUGGGACGA-----------GCUCCuGGA-CUGGU- -5'
8069 3' -57.1 NC_001973.1 + 70856 0.7 0.629006
Target:  5'- cGGUCGCCgUGCUCGcccGACUcGACCAa -3'
miRNA:   3'- -CUAGUGGgACGAGCuc-CUGGaCUGGU- -5'
8069 3' -57.1 NC_001973.1 + 62562 0.72 0.558246
Target:  5'- cAUCACCCUGUgCGAGGGCUcGAgCGg -3'
miRNA:   3'- cUAGUGGGACGaGCUCCUGGaCUgGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.