Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8069 | 3' | -57.1 | NC_001973.1 | + | 124774 | 0.66 | 0.861941 |
Target: 5'- cGcgCGCUCUGUUCGAcuAUCUGGCCGc -3' miRNA: 3'- -CuaGUGGGACGAGCUccUGGACUGGU- -5' |
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8069 | 3' | -57.1 | NC_001973.1 | + | 49010 | 0.67 | 0.8217 |
Target: 5'- -cUCACCUUGCuUCGAacGCCUuGGCCAa -3' miRNA: 3'- cuAGUGGGACG-AGCUccUGGA-CUGGU- -5' |
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8069 | 3' | -57.1 | NC_001973.1 | + | 119215 | 0.67 | 0.795454 |
Target: 5'- -cUCGCCCUGCgUCGAGGucgacGCC-GAgCAg -3' miRNA: 3'- cuAGUGGGACG-AGCUCC-----UGGaCUgGU- -5' |
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8069 | 3' | -57.1 | NC_001973.1 | + | 98770 | 0.69 | 0.728546 |
Target: 5'- uGUCGCCCUGCUggugaaaCGAGGACaucgUGugCc -3' miRNA: 3'- cUAGUGGGACGA-------GCUCCUGg---ACugGu -5' |
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8069 | 3' | -57.1 | NC_001973.1 | + | 146658 | 0.69 | 0.719701 |
Target: 5'- --cCACCCUGUUgagcgcgcucaCGAGGuCCUgGACCAg -3' miRNA: 3'- cuaGUGGGACGA-----------GCUCCuGGA-CUGGU- -5' |
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8069 | 3' | -57.1 | NC_001973.1 | + | 70856 | 0.7 | 0.629006 |
Target: 5'- cGGUCGCCgUGCUCGcccGACUcGACCAa -3' miRNA: 3'- -CUAGUGGgACGAGCuc-CUGGaCUGGU- -5' |
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8069 | 3' | -57.1 | NC_001973.1 | + | 62562 | 0.72 | 0.558246 |
Target: 5'- cAUCACCCUGUgCGAGGGCUcGAgCGg -3' miRNA: 3'- cUAGUGGGACGaGCUCCUGGaCUgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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