miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8091 5' -56.7 NC_001978.2 + 34344 0.66 0.564879
Target:  5'- uUCGCGCgucgUGUacagcguGGCUCCGGcaagcuCCGcCGa -3'
miRNA:   3'- cAGCGCGa---ACA-------UCGAGGCCu-----GGCaGU- -5'
8091 5' -56.7 NC_001978.2 + 20166 0.68 0.420704
Target:  5'- -aCGgGCgUGUAGCUCUucugacuGACCGUCAu -3'
miRNA:   3'- caGCgCGaACAUCGAGGc------CUGGCAGU- -5'
8091 5' -56.7 NC_001978.2 + 20390 0.68 0.401793
Target:  5'- cUCGCGCcgUGcgGGCUUCcuuGACCGUCGa -3'
miRNA:   3'- cAGCGCGa-ACa-UCGAGGc--CUGGCAGU- -5'
8091 5' -56.7 NC_001978.2 + 26186 0.69 0.392542
Target:  5'- -aCGCGCUUGUGGCa-UGGACUGaCGg -3'
miRNA:   3'- caGCGCGAACAUCGagGCCUGGCaGU- -5'
8091 5' -56.7 NC_001978.2 + 5098 0.7 0.323689
Target:  5'- -cCGCGCUUGa---UCCGG-CCGUCAa -3'
miRNA:   3'- caGCGCGAACaucgAGGCCuGGCAGU- -5'
8091 5' -56.7 NC_001978.2 + 33560 0.73 0.197344
Target:  5'- uGUCGCcCUUGUcGGCgCCGuGACCGUCGg -3'
miRNA:   3'- -CAGCGcGAACA-UCGaGGC-CUGGCAGU- -5'
8091 5' -56.7 NC_001978.2 + 11633 1.08 0.000613
Target:  5'- uGUCGCGCUUGUAGCUCCGGACCGUCAc -3'
miRNA:   3'- -CAGCGCGAACAUCGAGGCCUGGCAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.