miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8321 3' -51.5 NC_002067.1 + 5326 0.67 0.75182
Target:  5'- aGGAggGAuUGCAgGGcguAGAGCUUGGGCGc -3'
miRNA:   3'- -CCUa-CUcACGUaCC---UUUUGGACCCGC- -5'
8321 3' -51.5 NC_002067.1 + 2293 0.67 0.729588
Target:  5'- gGGAUGAGUugggccugauGCA-GGAuaaauauGGCCUGGaGCa -3'
miRNA:   3'- -CCUACUCA----------CGUaCCUu------UUGGACC-CGc -5'
8321 3' -51.5 NC_002067.1 + 7247 0.68 0.669999
Target:  5'- cGGGUGA-UGCGgaaagggcccgggacGGAGgcucgguuguugauGACCUGGGCGg -3'
miRNA:   3'- -CCUACUcACGUa--------------CCUU--------------UUGGACCCGC- -5'
8321 3' -51.5 NC_002067.1 + 19656 0.69 0.625657
Target:  5'- uGGcgGGcGUGCuccgaAUGGc--GCCUGGGCGa -3'
miRNA:   3'- -CCuaCU-CACG-----UACCuuuUGGACCCGC- -5'
8321 3' -51.5 NC_002067.1 + 10430 0.71 0.522042
Target:  5'- uGGAUGGcGUGCAauUGGgcGAggaucgcgcCCUGGGUGa -3'
miRNA:   3'- -CCUACU-CACGU--ACCuuUU---------GGACCCGC- -5'
8321 3' -51.5 NC_002067.1 + 30672 1.13 0.000772
Target:  5'- uGGAUGAGUGCAUGGAAAACCUGGGCGg -3'
miRNA:   3'- -CCUACUCACGUACCUUUUGGACCCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.