miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8942 3' -54.7 NC_002512.2 + 169310 0.66 0.978569
Target:  5'- -cCAAGuguGGGAGGGGCcugguauauaguGGGGGccGGACGu -3'
miRNA:   3'- cuGUUCu--UUCUCUCCG------------CCCCU--CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 222300 0.66 0.978569
Target:  5'- gGACAgcuAGGAGGAGAcucagGGCGaGacaGAGGACGa -3'
miRNA:   3'- -CUGU---UCUUUCUCU-----CCGC-Cc--CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 169412 0.66 0.978569
Target:  5'- -cCAAGuguGGGAGGGGCcugguauaugguGGGGGccGGACGu -3'
miRNA:   3'- cuGUUCu--UUCUCUCCG------------CCCCU--CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 49554 0.66 0.978569
Target:  5'- aGACGAGGGAGA-AGGCGcagcGGGAccuGACGa -3'
miRNA:   3'- -CUGUUCUUUCUcUCCGC----CCCUc--CUGC- -5'
8942 3' -54.7 NC_002512.2 + 29557 0.66 0.978569
Target:  5'- cGACAGG-AGGAcgccGGCGGGaagccgcuccccGAGGGCGg -3'
miRNA:   3'- -CUGUUCuUUCUcu--CCGCCC------------CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 103928 0.66 0.978569
Target:  5'- -cCGAGGGugugucgucGAGGGGCGGaagaggaaaGGAGGACa -3'
miRNA:   3'- cuGUUCUUu--------CUCUCCGCC---------CCUCCUGc -5'
8942 3' -54.7 NC_002512.2 + 96379 0.66 0.977187
Target:  5'- --gGGGGAGGAGAGGaaacCGGGGAcucaccggcggccucGGACc -3'
miRNA:   3'- cugUUCUUUCUCUCC----GCCCCU---------------CCUGc -5'
8942 3' -54.7 NC_002512.2 + 57940 0.66 0.976231
Target:  5'- aGCGGGAGAuAGAcgggcgcggcgcGGCGGGcgaaGAGGGCGa -3'
miRNA:   3'- cUGUUCUUUcUCU------------CCGCCC----CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 4525 0.66 0.976231
Target:  5'- gGugGAGGAGGAGAagcGGCGacGGuGAGG-CGg -3'
miRNA:   3'- -CugUUCUUUCUCU---CCGC--CC-CUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 25556 0.66 0.976231
Target:  5'- cACAGGuacauGAGGCGGuuGAGGGCGa -3'
miRNA:   3'- cUGUUCuuucuCUCCGCCc-CUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 77005 0.66 0.976231
Target:  5'- --aAGGAGGGAGGgugaacggacGGCgaGGGGAaGGACGa -3'
miRNA:   3'- cugUUCUUUCUCU----------CCG--CCCCU-CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 190637 0.66 0.975987
Target:  5'- gGACAGGAGGaguucGAGAGGUGGacGGuacagucGGGACa -3'
miRNA:   3'- -CUGUUCUUU-----CUCUCCGCC--CC-------UCCUGc -5'
8942 3' -54.7 NC_002512.2 + 87257 0.66 0.975987
Target:  5'- uGCGAGGGgucuccGGGGAGcgaacacgcggucGUGGGGuGGACGg -3'
miRNA:   3'- cUGUUCUU------UCUCUC-------------CGCCCCuCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 113266 0.66 0.975987
Target:  5'- aGGCGuucacGAAGGGGggccacAGGCGGGGgucgugcAGGGCGc -3'
miRNA:   3'- -CUGUu----CUUUCUC------UCCGCCCC-------UCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228222 0.66 0.97371
Target:  5'- aGGCcGGGc-GAGAcGGCGGGaAGGGCGa -3'
miRNA:   3'- -CUGuUCUuuCUCU-CCGCCCcUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 173647 0.66 0.97371
Target:  5'- -cCGGGucGGGGGcGGCGGcagcaagaaGGAGGACGa -3'
miRNA:   3'- cuGUUCuuUCUCU-CCGCC---------CCUCCUGC- -5'
8942 3' -54.7 NC_002512.2 + 228536 0.66 0.97371
Target:  5'- cGACGAGAcgacacGGGAGGCGGacGGcagccGGACGc -3'
miRNA:   3'- -CUGUUCUuu----CUCUCCGCC--CCu----CCUGC- -5'
8942 3' -54.7 NC_002512.2 + 226588 0.66 0.97371
Target:  5'- -cCAGGAGGGcGcGGCccgGGGGAGGAgGg -3'
miRNA:   3'- cuGUUCUUUCuCuCCG---CCCCUCCUgC- -5'
8942 3' -54.7 NC_002512.2 + 81865 0.66 0.971001
Target:  5'- cGGCGGGAAGcgacAGAGGCccaGGGAGGcCGu -3'
miRNA:   3'- -CUGUUCUUUc---UCUCCGc--CCCUCCuGC- -5'
8942 3' -54.7 NC_002512.2 + 2068 0.66 0.971001
Target:  5'- aGCGGGAGcgcGGAGuccacgccGGGCGGGaGcGGGCGg -3'
miRNA:   3'- cUGUUCUU---UCUC--------UCCGCCC-CuCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.