miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8943 3' -55.4 NC_002512.2 + 155259 0.66 0.972207
Target:  5'- cGGcGUCgACGGCucgcGGGAGCcGaGGCGGCu -3'
miRNA:   3'- -CC-UAGgUGUCG----UCCUCGuCcUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 14484 0.66 0.972207
Target:  5'- uGGG-CCAgGGCAGGGcgaacaugguGCcGGGGCuGGCg -3'
miRNA:   3'- -CCUaGGUgUCGUCCU----------CGuCCUUG-CCG- -5'
8943 3' -55.4 NC_002512.2 + 82847 0.66 0.972207
Target:  5'- cGGUCCGCGcGCAGGucCAGGAagACGu- -3'
miRNA:   3'- cCUAGGUGU-CGUCCucGUCCU--UGCcg -5'
8943 3' -55.4 NC_002512.2 + 132982 0.66 0.972207
Target:  5'- -cAUCCGCgGGUAGuAGCAGGGGaaccCGGCc -3'
miRNA:   3'- ccUAGGUG-UCGUCcUCGUCCUU----GCCG- -5'
8943 3' -55.4 NC_002512.2 + 49432 0.66 0.972207
Target:  5'- ---aCCACAuccCAGGGGCGGGgugaaaGugGGCu -3'
miRNA:   3'- ccuaGGUGUc--GUCCUCGUCC------UugCCG- -5'
8943 3' -55.4 NC_002512.2 + 16261 0.66 0.972207
Target:  5'- ---cCCGCGGCGGccaaGAGuCAGGGaccggacgcgACGGCg -3'
miRNA:   3'- ccuaGGUGUCGUC----CUC-GUCCU----------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 174767 0.66 0.972207
Target:  5'- aGGAccgcguccgucUCCGCGaacucgucCAGGAGCAGGggUuggaccuucuGGCg -3'
miRNA:   3'- -CCU-----------AGGUGUc-------GUCCUCGUCCuuG----------CCG- -5'
8943 3' -55.4 NC_002512.2 + 92532 0.66 0.972207
Target:  5'- cGGAUCUACccGGCcGcGGCGGccGCGGCg -3'
miRNA:   3'- -CCUAGGUG--UCGuCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 118907 0.66 0.972207
Target:  5'- gGGGcCCGCGcuGUGGGAGaagGGGGACGuGCu -3'
miRNA:   3'- -CCUaGGUGU--CGUCCUCg--UCCUUGC-CG- -5'
8943 3' -55.4 NC_002512.2 + 118111 0.66 0.971936
Target:  5'- cGGA-CCggccguaucgcugACGGgggaGGGGGCGGGGGCGGa -3'
miRNA:   3'- -CCUaGG-------------UGUCg---UCCUCGUCCUUGCCg -5'
8943 3' -55.4 NC_002512.2 + 11385 0.66 0.971936
Target:  5'- gGGGUCCgACGGCucGGAcgcggacgacccGCGGGAcgaggagaugaccGCGGUc -3'
miRNA:   3'- -CCUAGG-UGUCGu-CCU------------CGUCCU-------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 215614 0.66 0.971936
Target:  5'- cGGGUCUGCGGCAGcguggccGAGCucuucgccguGGGGCuGCg -3'
miRNA:   3'- -CCUAGGUGUCGUC-------CUCGu---------CCUUGcCG- -5'
8943 3' -55.4 NC_002512.2 + 160891 0.66 0.970551
Target:  5'- aGGGUUCgggaagcgggGCGGCcGGGGCAaGGGacgcggacagucgcuGCGGCg -3'
miRNA:   3'- -CCUAGG----------UGUCGuCCUCGU-CCU---------------UGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227996 0.66 0.969408
Target:  5'- aGGAgUgACAGaagagAGGAGagaaGGGAACGGUg -3'
miRNA:   3'- -CCUaGgUGUCg----UCCUCg---UCCUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 133864 0.66 0.969408
Target:  5'- aGGAcgUCCugggGCGGCucgAGGAGCGGcu-CGGCc -3'
miRNA:   3'- -CCU--AGG----UGUCG---UCCUCGUCcuuGCCG- -5'
8943 3' -55.4 NC_002512.2 + 59832 0.66 0.969408
Target:  5'- aGGcggCCGCGGCGGcGGCGGccAUGGCc -3'
miRNA:   3'- -CCua-GGUGUCGUCcUCGUCcuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 227522 0.66 0.969408
Target:  5'- gGGAgagUCCgGCGGCggacGGGGGgAGGAG-GGCg -3'
miRNA:   3'- -CCU---AGG-UGUCG----UCCUCgUCCUUgCCG- -5'
8943 3' -55.4 NC_002512.2 + 47819 0.66 0.969408
Target:  5'- cGGAgCCGCGGCuGaGGUcGGcGCGGCu -3'
miRNA:   3'- -CCUaGGUGUCGuCcUCGuCCuUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 129848 0.66 0.969408
Target:  5'- uGGAggCGgaGGCGGaGGCGGaGGACGGCg -3'
miRNA:   3'- -CCUagGUg-UCGUCcUCGUC-CUUGCCG- -5'
8943 3' -55.4 NC_002512.2 + 7491 0.66 0.969408
Target:  5'- cGAagCCGCGGCgcuccaugAGGAGCcagagcccgccgGGGAagGCGGCc -3'
miRNA:   3'- cCUa-GGUGUCG--------UCCUCG------------UCCU--UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.