miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
903 3' -48.9 NC_000899.1 + 10845 0.68 0.858513
Target:  5'- --cGUGCgcga-GACGCCCUCggaaGCGGa -3'
miRNA:   3'- uuuUACGauucgUUGCGGGAGa---UGCC- -5'
903 3' -48.9 NC_000899.1 + 5001 0.7 0.735346
Target:  5'- uGAGAUcGgUGAGCGAUGCCgUCU-CGGa -3'
miRNA:   3'- -UUUUA-CgAUUCGUUGCGGgAGAuGCC- -5'
903 3' -48.9 NC_000899.1 + 18586 0.7 0.735346
Target:  5'- ---uUGaCUGAGCGGCGCgUUCgACGGg -3'
miRNA:   3'- uuuuAC-GAUUCGUUGCGgGAGaUGCC- -5'
903 3' -48.9 NC_000899.1 + 24134 0.72 0.64218
Target:  5'- ----aGCUGcGGCAugGCCUUCU-CGGa -3'
miRNA:   3'- uuuuaCGAU-UCGUugCGGGAGAuGCC- -5'
903 3' -48.9 NC_000899.1 + 28521 0.72 0.626798
Target:  5'- gAGGAUGCgGAGCGGCGuuuucgagaugcccCCCUCgACGGa -3'
miRNA:   3'- -UUUUACGaUUCGUUGC--------------GGGAGaUGCC- -5'
903 3' -48.9 NC_000899.1 + 18722 0.73 0.583155
Target:  5'- ---cUGCUcaAAGCGGCGCaCCcgCUACGGc -3'
miRNA:   3'- uuuuACGA--UUCGUUGCG-GGa-GAUGCC- -5'
903 3' -48.9 NC_000899.1 + 8786 1.08 0.003346
Target:  5'- gAAAAUGCUAAGCAACGCCCUCUACGGc -3'
miRNA:   3'- -UUUUACGAUUCGUUGCGGGAGAUGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.