miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
909 3' -54.1 NC_000899.1 + 8304 0.66 0.757681
Target:  5'- gGCGGUgGCGUaauGGGCGUgGUCAUCCUcgGCu -3'
miRNA:   3'- -CGCCA-UGCA---UCUGCAgUGGUGGGA--CG- -5'
909 3' -54.1 NC_000899.1 + 24104 0.66 0.736669
Target:  5'- -gGGUACGggaaaccagAGugGUCGgCGuCCCUGg -3'
miRNA:   3'- cgCCAUGCa--------UCugCAGUgGU-GGGACg -5'
909 3' -54.1 NC_000899.1 + 17985 0.66 0.725996
Target:  5'- -aGGUugGggcauGCGUCGCCGCUCgucuaUGCg -3'
miRNA:   3'- cgCCAugCauc--UGCAGUGGUGGG-----ACG- -5'
909 3' -54.1 NC_000899.1 + 11608 0.67 0.714145
Target:  5'- -aGGcucUGCGUuGACGUC-CCACCCcacgaucaguaccUGCa -3'
miRNA:   3'- cgCC---AUGCAuCUGCAGuGGUGGG-------------ACG- -5'
909 3' -54.1 NC_000899.1 + 972 0.68 0.649262
Target:  5'- gGCGG-ACGUGGugGU-GCCGCCgaagaGCg -3'
miRNA:   3'- -CGCCaUGCAUCugCAgUGGUGGga---CG- -5'
909 3' -54.1 NC_000899.1 + 16593 0.68 0.644818
Target:  5'- cGCGGUacuuuauGCuguuccuuccacccGUAGGCGcCAUCACCCUcuGCa -3'
miRNA:   3'- -CGCCA-------UG--------------CAUCUGCaGUGGUGGGA--CG- -5'
909 3' -54.1 NC_000899.1 + 34246 0.68 0.604811
Target:  5'- cCGaGUACGUAacaGCGUCACCAUCaugGCu -3'
miRNA:   3'- cGC-CAUGCAUc--UGCAGUGGUGGga-CG- -5'
909 3' -54.1 NC_000899.1 + 18821 0.69 0.593734
Target:  5'- aGCGGU-CGUuccGGuCGUCAUguCCCUGg -3'
miRNA:   3'- -CGCCAuGCA---UCuGCAGUGguGGGACg -5'
909 3' -54.1 NC_000899.1 + 6367 0.71 0.465653
Target:  5'- cGCuGGUGCGUGcucgaucaGCGguaCGCCAUCCUGCc -3'
miRNA:   3'- -CG-CCAUGCAUc-------UGCa--GUGGUGGGACG- -5'
909 3' -54.1 NC_000899.1 + 28107 0.71 0.455589
Target:  5'- aGCGG-ACGguaAGACG-CACC-CCCUGg -3'
miRNA:   3'- -CGCCaUGCa--UCUGCaGUGGuGGGACg -5'
909 3' -54.1 NC_000899.1 + 11716 1.14 0.0005
Target:  5'- gGCGGUACGUAGACGUCACCACCCUGCa -3'
miRNA:   3'- -CGCCAUGCAUCUGCAGUGGUGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.