miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9433 3' -42.9 NC_002531.1 + 36015 0.66 1
Target:  5'- gUUGCcGGCCAcgGGGGcGAGggUUCGc -3'
miRNA:   3'- aGACGuUUGGU--UCUCuUUCuuAAGUc -5'
9433 3' -42.9 NC_002531.1 + 73493 0.66 1
Target:  5'- gCUuuGAACCAAGGGAGAauGUUUAGc -3'
miRNA:   3'- aGAcgUUUGGUUCUCUUUcuUAAGUC- -5'
9433 3' -42.9 NC_002531.1 + 35001 0.66 1
Target:  5'- cUCaGgGAGCCAGGAGugcAGGAcUUCGGc -3'
miRNA:   3'- -AGaCgUUUGGUUCUCu--UUCUuAAGUC- -5'
9433 3' -42.9 NC_002531.1 + 111248 0.67 0.999998
Target:  5'- aUCUGUGGAaaaCAGGcacAGAGAGGAcUCAGa -3'
miRNA:   3'- -AGACGUUUg--GUUC---UCUUUCUUaAGUC- -5'
9433 3' -42.9 NC_002531.1 + 64698 0.67 0.999998
Target:  5'- aCUGCAAGCCucuGGGGAGcuGAcUCAc -3'
miRNA:   3'- aGACGUUUGGu--UCUCUUucUUaAGUc -5'
9433 3' -42.9 NC_002531.1 + 124838 0.69 0.999953
Target:  5'- aUCUGUAAugCGGGuGGAAGuuggCAGg -3'
miRNA:   3'- -AGACGUUugGUUCuCUUUCuuaaGUC- -5'
9433 3' -42.9 NC_002531.1 + 49826 0.7 0.999848
Target:  5'- gUCUGCAAGCuuCAAGAGAAGGugggguguauAGUUCc- -3'
miRNA:   3'- -AGACGUUUG--GUUCUCUUUC----------UUAAGuc -5'
9433 3' -42.9 NC_002531.1 + 89466 0.71 0.999575
Target:  5'- aCUGCu-GCCGGGGGAGAGAccUCuGa -3'
miRNA:   3'- aGACGuuUGGUUCUCUUUCUuaAGuC- -5'
9433 3' -42.9 NC_002531.1 + 38614 0.72 0.998943
Target:  5'- cUCUGCccgucucgcGACCGAGAGGGAGAGgUUCu- -3'
miRNA:   3'- -AGACGu--------UUGGUUCUCUUUCUU-AAGuc -5'
9433 3' -42.9 NC_002531.1 + 73196 0.73 0.996598
Target:  5'- gUCUGCAAAaauauucuCCAGGAGAAcaAAUUUAGa -3'
miRNA:   3'- -AGACGUUU--------GGUUCUCUUucUUAAGUC- -5'
9433 3' -42.9 NC_002531.1 + 17073 0.75 0.992272
Target:  5'- gCUGCAGACCcugAAGGGGAAGGccgaggggUCAGa -3'
miRNA:   3'- aGACGUUUGG---UUCUCUUUCUua------AGUC- -5'
9433 3' -42.9 NC_002531.1 + 43054 1.11 0.036822
Target:  5'- gUCUGCAAACCAAGAGAAAGAAUUCAGc -3'
miRNA:   3'- -AGACGUUUGGUUCUCUUUCUUAAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.