Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
944 | 5' | -56.1 | NC_000899.1 | + | 38282 | 1.1 | 0.000393 |
Target: 5'- cAUUGCGCCUAACAGCCACCAGGUGGCg -3' miRNA: 3'- -UAACGCGGAUUGUCGGUGGUCCACCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 28584 | 0.69 | 0.38187 |
Target: 5'- --cGCaGCUggguCAGaCACCGGGUGGCu -3' miRNA: 3'- uaaCG-CGGauu-GUCgGUGGUCCACCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 200 | 0.66 | 0.5559 |
Target: 5'- aAUUGCGCCggcACAGUC-CCAa-UGGCu -3' miRNA: 3'- -UAACGCGGau-UGUCGGuGGUccACCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39285 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39150 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39016 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 38881 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 40094 | 0.68 | 0.459542 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGG-GGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 40538 | 0.68 | 0.459542 |
Target: 5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3' miRNA: 3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 40403 | 0.68 | 0.459542 |
Target: 5'- --gGCgGCCcu-CGGCCGCCAGG-GGg -3' miRNA: 3'- uaaCG-CGGauuGUCGGUGGUCCaCCg -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39420 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39555 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39690 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39825 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 39960 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 40229 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 40364 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 40499 | 0.68 | 0.44937 |
Target: 5'- --aGUGUCUGucucCGGCCGgCAGGgGGCg -3' miRNA: 3'- uaaCGCGGAUu---GUCGGUgGUCCaCCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 18783 | 0.78 | 0.089862 |
Target: 5'- -gUGCGCCgcuuugAGCAGCgGCCAGGgcGGCc -3' miRNA: 3'- uaACGCGGa-----UUGUCGgUGGUCCa-CCG- -5' |
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944 | 5' | -56.1 | NC_000899.1 | + | 4832 | 0.66 | 0.54484 |
Target: 5'- -gUGCGCCcu-CA-CCAUCAaacGGUGGCu -3' miRNA: 3'- uaACGCGGauuGUcGGUGGU---CCACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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