Results 1 - 6 of 6 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9523 | 3' | -49.4 | NC_002532.2 | + | 494 | 0.67 | 0.546711 |
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Target: 5'- cCUUGaGC-UGUUGCAACACccugcuuucgccCAGCUGCg -3' miRNA: 3'- -GAAC-CGuAUAGUGUUGUGc-----------GUCGACG- -5' |
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| 9523 | 3' | -49.4 | NC_002532.2 | + | 4398 | 0.68 | 0.463531 |
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Target: 5'- --cGGUAUgcagcAUCACcauGCugGCuGCUGCc -3' miRNA: 3'- gaaCCGUA-----UAGUGu--UGugCGuCGACG- -5' |
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| 9523 | 3' | -49.4 | NC_002532.2 | + | 1432 | 0.68 | 0.463531 |
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Target: 5'- --cGGCGcuggUACGGgGCGUGGCUGCc -3' miRNA: 3'- gaaCCGUaua-GUGUUgUGCGUCGACG- -5' |
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| 9523 | 3' | -49.4 | NC_002532.2 | + | 568 | 0.68 | 0.440326 |
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Target: 5'- -aUGGCuaaccuagcAUCAaccACACGCAGCUGg -3' miRNA: 3'- gaACCGua-------UAGUgu-UGUGCGUCGACg -5' |
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| 9523 | 3' | -49.4 | NC_002532.2 | + | 11467 | 0.7 | 0.374914 |
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Target: 5'- --gGGCAUGUCAuCAAacaGCGCA-CUGUa -3' miRNA: 3'- gaaCCGUAUAGU-GUUg--UGCGUcGACG- -5' |
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| 9523 | 3' | -49.4 | NC_002532.2 | + | 906 | 1.14 | 0.00021 |
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Target: 5'- gCUUGGCAUAUCACAACACGCAGCUGCa -3' miRNA: 3'- -GAACCGUAUAGUGUUGUGCGUCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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